New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4059731	54 (0.790)	3 (0.050)	3/320	NT	5.6%	coding (1168/1638 nt)	pgm	phosphoglucomutase
	?	AE015451	= 4059764	51 (0.790)					coding (1135/1638 nt)	pgm	phosphoglucomutase

TGCTCCGGCGCCAGCTTGCTCAGCAACGCCTTCTGCCGCGCATCGGCCTTGGCCTCGACACGGGTGGCGAACGGCTTGCCCAGCGCCTCGGTCAGGTCGGCATAAGCCTGGCTCGGGTTACGCCCGGTACGGGCGGTCATTTCGGCGGCCAGCAAGGCCGGGATCAACCCGTCCTTGTCGGTGGCCCACACCGAGCCATCGCGACGCAGGAACGAAGCCCCTGCACTTTCTTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4059496‑4059731 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcttcgccCAGGGCCTGTTCGACGGTTCGCTCGGTTTTGGTGGCGAAGAAAGTGCAGGGGCTTCGTTCCTGCGTCGCGATGGCTCGGTGTGGGCCACCGACAAGGACGGGTTGATCCCGGCCTTGCTGGCCGCCGAAATGACCGCCCGTACCGGGCGTAACCCGAGCCAGGCTTATGCCGACCTGACCGAGGCGCTGGGCAAGCCGTTCGCCACCCGTGTCGAGGCCAAGGCCGATGCGCG  <  AE015451/4059764‑4059532                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGCTCCGGCGCCAGCTTGCTCAGCAACGCCTTCTGCCGCGCATCGGCCTTGGCCTCGACACGGGTGGCGAACGGCTTGCCCAGCGCCTCGGTCAGGTCGGCATAAGCCTGGCTCGGGTTACGCCCGGTACGGGCGGTCATTTCGGCGGCCAGCAAGGCCGGGATCAACCCGTCCTTGTCGGTGGCCCACACCGAGCCATCGCGACGCAGGAACGAAGCCCCTGCACTTTCTTCGC                                                                                                                                                                                                                                            >  1:416811/1‑235                                                               GGTGGCGAACGGCTTGCCCAGCGCCTCGGTCAGGTCGGCATAAGCCTGGCTCGGGTTACGCCCGGTACGGGCGGTCATTTCGGCGGCCAGCAAGGCCGGGATCAACCCGTCCTTGTCGGTGGCCCACACCGAGCCATCGCGACGCAGGAACGAAGCCCCTGCACTTTCTTCGCCCAGGGCCTGTTCGACGGTTCGCTCGGTTTTGGTGGCGAAGAAAGTGCAGGGGCTTCGTTCCT                                                                                                                                                                             <  1:1135133/236‑1                                                                                                                       TACGCCCGGTACGGGCGGTCATTTCGGCGGCCAGCAAGGCCGGGATCAACCCGTCCTTGTCGGTGGCCCACACCGAGCCATCGCGACGCAGGAACGAAGCCCCTGCAGTTTCTTCG                                                                                                                                                                                                                                             >  2:1255036/1‑116                                                                                                                                  CGGGCGGTCATTTCGGCGGCCAGCAAGGCCGGGATCAACCCGTCCTTGTCGGTGGCCCACACCGAGCCATCGCGACGCAGGAACGAAGCCCCTGCACTTTCTTCGCCCAGGGCCTGTTCGACGGTTCGCTCGGTTTTGGTGGCGAAGAAAGTG                                                                                                                                                                                             >  1:569962/1‑153                                                                                                                                              TCGGCGGCCAGCAAGGCCGGGATCAACCCGTCCTTGTCGGTGGCCCACACCGAGCCATCGCGACGCAGGAACGAAGCCCCTGCACTTTCTTCGCCCAGGGCCTGTTCGACGGTTCGCTCGGTTTTGGT                                                                                                                                                                                                          <  2:569959/128‑1                                                                                                                                                                                                                                    TTCTTCGCCCAGGGCCTGTTCGACGGTTCGCTCGGTTTTGGTGGCGAAGAAAGTGCAGGGGCTTCGTTCCTGCGTCGCGATGGCTCGGTGTGGGCCACCGACAAGGACGGGTTGATCCCGGCCTTGCTGGCCGCCGAAATGACCGCCCGTACCGGGCGTAACCCG                                                                               <  1:215854/165‑1                                                                                                                                                                                                                                        tccCCCAGGCCCTGTTCCACGGTTCGCTCGGTTTTGGTGGCGAAGAAAGTGCAGGGGCTTCGTTCCTG                                                                                                                                                                            <  1:380585/65‑1                                                                                                                                                                                                                                        TCGCCCAGGGCCTGTTCGACGGTTCGCTCGGT                                                                                                                                                                                                                >  2:1048439/1‑32                                                                                                                                                                                                                                           CCCAGGGCCTGTTCGACGGTTCGCTCGGTTTTGGTGGCGAAGAAAGTGCAGGGGCTTCGTTCCTGCGTCGCGATGGCTCGGTGTGGGCCACCGACAAGGACGGGTTGATCCCGGCCTTGCTGGCCGCCGAAATGACCGCCCGTACCGGGCGTAACCCGAGCCAGGCTTATGCCGACCTGACCGAGGCGCTGGGCAAGCCGTTCGCCACCCGTGTCGAGGCCAAGGCCGATGCGCG  >  1:1062354/1‑235                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGCTCCGGCGCCAGCTTGCTCAGCAACGCCTTCTGCCGCGCATCGGCCTTGGCCTCGACACGGGTGGCGAACGGCTTGCCCAGCGCCTCGGTCAGGTCGGCATAAGCCTGGCTCGGGTTACGCCCGGTACGGGCGGTCATTTCGGCGGCCAGCAAGGCCGGGATCAACCCGTCCTTGTCGGTGGCCCACACCGAGCCATCGCGACGCAGGAACGAAGCCCCTGCACTTTCTTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4059496‑4059731 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcttcgccCAGGGCCTGTTCGACGGTTCGCTCGGTTTTGGTGGCGAAGAAAGTGCAGGGGCTTCGTTCCTGCGTCGCGATGGCTCGGTGTGGGCCACCGACAAGGACGGGTTGATCCCGGCCTTGCTGGCCGCCGAAATGACCGCCCGTACCGGGCGTAACCCGAGCCAGGCTTATGCCGACCTGACCGAGGCGCTGGGCAAGCCGTTCGCCACCCGTGTCGAGGCCAAGGCCGATGCGCG  <  AE015451/4059764‑4059532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.