New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 4418726 = | 80 (1.170) | 6 (0.090) | 5/314 | NT | 7.7% | coding (242/351 nt) | PP_3908 | conserved protein of unknown function |
? | AE015451 | 4418770 = | 70 (1.100) | coding (286/351 nt) | PP_3908 | conserved protein of unknown function |
GAAGTTCGAAAAGGGTGAAGTCAGCAACTTCGATGACGTGGAGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4418966‑4418726 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgcgtcagTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTCCTCCACGTCATCGAAGTTGCTGACTTCACCCTTTTCGAACTTCTCGCGCGCCAGCTCCTCAGCCTCGCTGATGTC > AE015451/4418770‑4418998 GAAGTTCGAAAAGGGTGAAGTCAGCAACTTCGATGACGTGGAGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCG > 1:596279/1‑235 AGTTCGAAAAGGGTGAAGTCAGCAACTTCGATGACGTGGAGGAGCTGGAGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGACGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCG > 1:1185820/1‑235 GATGACGTGGAGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCG < 1:594069/204‑1 AAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGT > 2:1282415/1‑184 GGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGT > 1:1171376/1‑181 GTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAG < 1:1064998/235‑1 CTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGG < 2:1051996/164‑1 GCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTT < 1:694466/165‑1 AGAGTGCTTCAGCTGCGAGTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGT < 1:460709/204‑1 ACTGCGACTAGGGAAGGGCGATCGTCATAGCGGTGGCAGTATCTCGTCGCCTGGGTAACGCTTAAGCGCGGTCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGG < 2:365891/126‑1 TTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGG < 2:526111/173‑1 AGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGC < 2:696252/148‑1 ggcCTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTCCTCCACGTCATCGAAGTTGCTGACTTCACCCTTT < 1:87024/232‑1 cgAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGGCGCGACATTGGCCGAGCTTATGCGTTACCCAGGCGACGAGATAG < 1:1000107/86‑1 ctGCGCGTCAGTTCAACGACGCGCCATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTCCTCCACGTCATCGAAGT < 2:323900/180‑1 CGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTCCTCCACGTCATCGAAGTTGCTGACTTCACCCTTTTCGAACTTCTCGCGCGCCAGCTCCTCAGCCTCGCTGATGTC > 1:840513/1‑235 GAAGTTCGAAAAGGGTGAAGTCAGCAACTTCGATGACGTGGAGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4418966‑4418726 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgcgtcagTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTCCTCCACGTCATCGAAGTTGCTGACTTCACCCTTTTCGAACTTCTCGCGCGCCAGCTCCTCAGCCTCGCTGATGTC > AE015451/4418770‑4418998 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |