New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4832748	60 (0.870)	5 (0.080)	4/326	NT	7.8%	coding (443/1014 nt)	pvdY	hydroxyproline acetylase
	?	AE015451	= 4832762	61 (0.920)					coding (429/1014 nt)	pvdY	hydroxyproline acetylase

TAGGCAAACGGCTCGTCATCGAAACAACCGATCAACGTCAACGTATGCGGGTCGGCTTCGAGCTTGGCCAAGTATTCGCGGTGCTGCGCCAGCGTGCCACCCTCCTGCCAGAACGCCTCCACGCGAGGGTTGTTCTGCCAGCGGTTGAAACGCTCCAGGTCATGCTCGATCTCCAGGGTACGCAGCGATACCCAACTGCCCAAGCGCGCATCGAAGCGCCGGTACACTTCGCCCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4832511‑4832748 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgCCGGGCGCCCAAGCCGCGGGGCGAAGTGTACCGGCGCTTCGATGCGCGCTTGGGCAGTTGGGTATCGCTGCGTACCCTGGAGATCGAGCATGACCTGGAGCGTTTCAACCGCTGGCAGAACAACCCTCGCGTGGAGGCGTTCTGGCAGGAGGGTGGCACGCTGGCGCAGCACCGCGAATACTTGGCCAAGCTCGAAGCCGACCCGCATACGTTGACGTTGATCGGTTGTTTC  <  AE015451/4832762‑4832531                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TAGGCAAACGGCTCGTCATCGAAACAACCGATCAACGTCAACGTATGCGGGTCGGCTTCGAGCTTGGCCAAGTATTCGCGGTGCTGCGCCAGCGTGCCACCCTCCTGCCAGAACGCCTCCACGCGAGGGTTGTTCTGCCAGCGGTTGAAACGCTCCAGGTCATGCTCGATCTCCAGGGTACGCAGCGATACCCAACTGCCCAAGCGCGCATCGAAGCGCCGGTACACTTCGCCCC                                                                                                                                                                                                                                             >  1:1218506/1‑235                                                                                                                                                                                       CAGCGATACCCAACTGCCCAAGCGCGCATCGAAGCGCCGGTACACTTCGCCCCGCGCCGGGCGCCCAAGCCGCGGGGCGAAGTGTACCGGCGCTTCGATGCGCGCCTGGGCAGTTGGGTATCGCTGCGTACCCTGCAGATC                                                                                                                                                     >  2:848911/1‑141                                                                                                                                                                                           GATACCCAACTGCCCAAGCGCGCATCGAAGCGCCCGTACACTGCGCCCCGCGCCGGGCGCCCAAGCCGCGGGCCGAAGTGTACCGGCGCTTCGATGCGCGCTTGGGCAGTTGGGCATCGCTGCGTACCCTGGAGATCGAGCATGACCTGGAGCGTTTCAACCGCTGGCAGAACAACCCTCGCGTGGAGGCGTTCTGGCAGGAGG                                                                                  >  1:1142075/1‑204                                                                                                                                                                                                            GCGCGCATCGAAGCGCCGGTACACTTCGCCCCGCGCCGGGCGCCCAAGCCGCGGGGCGAAGCGGACCGGCGCTTCGATGCGCGCTTGGGCAGTTGGGGATCGCTGCGTACCCTGGTGAgc                                                                                                                                                     >  1:204283/1‑118                                                                                                                                                                                                                                 CACTTCGCCCCGCGCCGGGCGCCCAAGCCGCGGGGCGAAGTGTACCGGCGCTTCGATGCGCGCTTGGGCAGTTGGGTATCGCTGCGTACCCTGGAGATCGAGCATGACCTGGAGCGTTTCAACCGCTGGCAGAACAACCCTCGCGTGGAGGCGTTCTGGCAGGAGGGTGGCACGCTGGCGCAGCACCGCGAATACTTGGCCAAGCTCGAAGCCGACCCGCATACGTTGACGTTGAT            >  1:506859/1‑236                                                                                                                                                                                                                                 CACTTCGCCCCGCGCCGGGCGCCCAAGCCGCGGGGCGAAGTGTACCGGCGCTTCGATGCGCGCTTGGGCAGTTGGGTATCGCTGCGTACCCTGGAGATCGAGCATGACCTGGAGCGTTTCAACCGCTGGCAGAACAACCCTCGCGTGGAGGCGTTCTGGCAGGAGGGTGGCACGCTGGCGCAGCACCGCGAATACTTGGCCAAGCTCGAAGCCGACCCGCATACGTTGACGTTGAT            >  1:534099/1‑236                                                                                                                                                                                                                                           CGCGCCGGGCGCCCAAGCCGCGGGGCGAAGTGTACCGGCGCTTCGATGCGCGCTTGGGCAGTTGGGTATCGCTGCGTACCCTGGAGATCGAGCATGACCTGGAGCGTTTCAACCGCTGGCAGAACAACCCTCGCGTGGAGGCGTTCTGGCAGGAGGGTGGCACGCTGGCGCAGCACCGCGAATACTTGGCCAAGCTCGAAGCCGACCCGCATACGTTGACGTTGATCGGTTGTTTC  >  1:1065746/1‑236                                                                                                                                                                                                                                            GCGCCGGGCGCCCAAGCCGCGGGGCGAAGTGTACCGGCGCTTCGATGCGCGCTTGGGCAGTTGGGTATCGCTGCGTACCCTGGAGATCGAGCATGACCTGGAGCGTTTCAACCGCTGGCAGAACAACCCTCGCGTGGAGGCGTTCTGGCAGGAGGGTGGCACGCTGGCGCAGCACCGCGAATACTTGGCCAAGCTCGAAGCCGACCCGCATACGTTGACGTT               >  1:966170/1‑222                                                                                                                                                                                                                                            GCGCCGGGCGCCCAAGCCGCGGGGCGAAGTGTACCGGCGCTTCGATGCGCGCTTGGGCAGTTGGGTATCGCTGCGTACCCTGGAGATCGAGCATGACCTGGAGCGTTTCAACCGCTGGCAGAACAACCCTCGCGTGGAGGCGTTCTGGCAGG                                                                                     >  2:1035239/1‑152                                                                                                                                                                                                                                            GCGCCGGGCGCCCAAGCCGCGGGGCGAAGTATACCGGCGCTTCGATGCGCGCTTGGGCAGTTGGGTATCGCTGCGTACCCTGGAGATCGAGCATGACCTGGA                                                                                                                                       >  2:1056531/1‑102                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TAGGCAAACGGCTCGTCATCGAAACAACCGATCAACGTCAACGTATGCGGGTCGGCTTCGAGCTTGGCCAAGTATTCGCGGTGCTGCGCCAGCGTGCCACCCTCCTGCCAGAACGCCTCCACGCGAGGGTTGTTCTGCCAGCGGTTGAAACGCTCCAGGTCATGCTCGATCTCCAGGGTACGCAGCGATACCCAACTGCCCAAGCGCGCATCGAAGCGCCGGTACACTTCGCCCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4832511‑4832748 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgCCGGGCGCCCAAGCCGCGGGGCGAAGTGTACCGGCGCTTCGATGCGCGCTTGGGCAGTTGGGTATCGCTGCGTACCCTGGAGATCGAGCATGACCTGGAGCGTTTCAACCGCTGGCAGAACAACCCTCGCGTGGAGGCGTTCTGGCAGGAGGGTGGCACGCTGGCGCAGCACCGCGAATACTTGGCCAAGCTCGAAGCCGACCCGCATACGTTGACGTTGATCGGTTGTTTC  <  AE015451/4832762‑4832531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.