New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5279872	55 (0.800)	4 (0.060)	4/320	NT	6.2%	coding (91/1086 nt)	trmA	tRNA/tmRNA (uracil‑C(5))‑methyltransferase
	?	AE015451	= 5279915	69 (1.060)					coding (134/1086 nt)	trmA	tRNA/tmRNA (uracil‑C(5))‑methyltransferase

CTTCATCGCCTGGACCGCCGTCAAGTTGATCTCGGGCCGCCACCGCGAACTCAACTCGGCCCTGGTGATCCTTTCCATCCTGTTCGTCATCAAGCTAGGCTGGTTCAACGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5279671‑5279872 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcgcgcAGGCGGTAATGCTCGCGCGGTGAGTCGAAAACAGCCGGTTCCGGCGCGCCGAACGGTGCCAGCAGCTCGCGCAGCCGGGCCACTTTGGCATCCAGCTGGGTGGCGTAGGAGGAGGGGTCGAAAGCAGCACTCATGCGTTGAACCAGCCTAGCTTGATGACGAACAGGATGGAAAGGATCACCAGGGCCGAGTTGAGTTCGCGGTGGCGGCCCGAGATCAACTTGACG  <  AE015451/5279915‑5279689                                                                                                                                                                                                                                                                                                                                                                                                                                               CTTCATCGCCTGGACCGCCGTCAAGTTGATCTCGGGCCGCCACCGCGAACTCAACTCGGCCCTGGTGATCCTTTCCATCCTGTTCGTCATCAAGCTAGGCTGGTTCAACGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGG                                                                                                                                                                                                                                          >  2:464933/1‑197                                     CCGCCACCGCGAACTCAACTCCGCCCTGGTGATCCTTTCCATCCTGTTCGTCATCAAGCTAGGCTGGTTCAACGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTT                                                                                                                                                                                                                                             <  1:296561/158‑1                                                                            CATCCTGTTCGTCATCAAGCTAGGCTGGTTCAACGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTT                                                                                                                                                                                                                                             >  2:675531/1‑119                                                                                                                                                               CAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCAGGCGGTAATGCTCGCGCGGGGAGTCGAAAACAGCCGGTT                                                                                                                                                                                             >  2:1231799/1‑84                                                                                                                                                                AAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGGCGAAAACAGCCGGTTCCGGCGCGCCGAACGGTGCCAGCA                                                                                                                                                                     >  1:22313/1‑107                                                                                                                                                                         CGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCAGGCGGTAATGCTCGCGCGGTG                                                                                                                                                                                                               >  2:1169212/1‑56                                                                                                                                                                                           GCACCGTTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGTCGAAAACAGCCGGTTCCGGCGCGCCGAACGGTGCCAGCAGCTCGCGCAGCCGGGCCACTTTGGCATCCAGCTGGGTGGCGTAGGAGGAGGGGTCGACAGCAGCACTCATGCGTTGAACCAGCCTAGCTTGATGACGAACAGGATGGAAAGGATCACCAGGGCCGAGTT                                    >  1:6771/1‑209                                                                                                                                                                                                   CGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGTCGAAAACAGCCGGTTCCGGCGCGCCGAACGGTGCCAGCAGCTCGCGCAGCCGGGCCACTTTGGCATCCAGCTGGGTGGCGTAGGAGGAGGGGTAGAAAGCAGCACTCATGCGTTGAACCAGCCTAGCTTGATGACGAACAGGATGGAAAGGATCACCAGGGCCGAGTTGAGTTCGCGGTGGCGGCCCGAGATCAACTTGACG  >  1:645711/1‑235                                                                                                                                                                                                     GCGCGCAGGCGGTAATGCTCGCGCGGTGAGTCGAAAACAGCCGGTTCCGGCGCGCCGAACGGTGCCAGCAGCTCGCGCAGCCGGGCCACTTTGGCATCCAGCTGGGTGGCGTAGGAGGAGGGGTCGAAAGCAGCACTCATGCGTTGAACCAGCCTAGCTTGATGACGAACA                                                                <  2:1126053/171‑1                                                                                                                                                                                                       GCGCAGGCGGTAATGCTCGCGCGGTGAGTCGAAAACAGCCGGTTCCGGCGCGCCGAACGGTGCCAGCAGCTCGCGCAGCCGGGCCACTTTGGCATCCAGCTGGGTGGCGTAGGAGGAGGGGTCGAAAGCAGCACTCATGCGTTGAACCAGCCTAGCTTGATGACGAACAGGATGGAAAGGATCACCAGGGCCGAGTTGAGTTCGCGGTGGCGGCCCGAGATCAACTTGAC   >  2:1112098/1‑230                                                                                                                                                                                                                                                                                                                                                                                                                                               CTTCATCGCCTGGACCGCCGTCAAGTTGATCTCGGGCCGCCACCGCGAACTCAACTCGGCCCTGGTGATCCTTTCCATCCTGTTCGTCATCAAGCTAGGCTGGTTCAACGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5279671‑5279872 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcgcgcAGGCGGTAATGCTCGCGCGGTGAGTCGAAAACAGCCGGTTCCGGCGCGCCGAACGGTGCCAGCAGCTCGCGCAGCCGGGCCACTTTGGCATCCAGCTGGGTGGCGTAGGAGGAGGGGTCGAAAGCAGCACTCATGCGTTGAACCAGCCTAGCTTGATGACGAACAGGATGGAAAGGATCACCAGGGCCGAGTTGAGTTCGCGGTGGCGGCCCGAGATCAACTTGACG  <  AE015451/5279915‑5279689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.