New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4808179	0 (0.000)	16 (0.250)	10/314	NT	47.1%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	AE015451	5988765 =	36 (0.560)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

AAAAGCTGACCTTGGCGTCAACTTTACAGCAATTGGGTGGGTAGAGGCAAAGTCAAGCTGACAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACAAACTCTTACTACTCCTGACCCACCCCCAACACCCGCG  >  AE015451/4807951‑4808381                                                                                                                                                                                                                                     |                                                                                                                                                                                                           aaaaGCTGACCTTGGCGTCAACTTGACAGCAATTGGGTGGGTAGAGGCAAAGTCAAGCTGACAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgct                                                                                                                                                                                                     <  1:79064‑M1/236‑8 (MQ=255)  aaaGCTGACCTTGGCGTCAACTTTACAGCAATTGGGTGGGTAGAGGCAAAGTCAAGCTGACAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcg                                                                                                                                                                                                       <  2:1232788‑M1/233‑6 (MQ=255)                                    ggtgggtAGAGGCAAAGTCAAGCTGACAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCGCGGGcggcgcttcgcgggtaaacccgctcctacgtttgtttcggcc                                                                                                                                                                  <  1:669062‑M1/236‑43 (MQ=255)                                          tAGAGGCAAAGTCAAGCTGACAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcggccagtccc                                                                                                                                                            <  1:782333‑M1/236‑49 (MQ=255)                                           agcggcaaAGTCAAGCTGACAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggcagtccc                                                                                                                                                            <  1:1100835‑M1/232‑49 (MQ=255)                                                            ggcaaTGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgctcgatctcacaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccg                                                                                                                                               <  2:1279585‑M1/229‑62 (MQ=255)                                                                          gtgtgtATAGGGCGATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacc                                                                                                                                                                                        <  1:210850‑M1/176‑21 (MQ=255)                                                                          gtgtgtATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgttt                                                                                                                                                                       <  1:820665‑M1/193‑38 (MQ=255)                                                                          gtgtgtATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgctcgatctcacaggcgctgaaaatcctccggcaaacacctcaaaattccaacgc                                                                                                                                                 <  1:1070434‑M1/215‑60 (MQ=255)                                                                                            gCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgg                                                                                                                                                                    >  2:1251875‑M1/1‑138 (MQ=255)                                                                                            gCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgg                                                                                                                                                                    <  1:1251878‑M1/178‑41 (MQ=255)                                                                                            gCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacg                                                                                                                                                                              >  2:492435‑M1/1‑138 (MQ=255)                                                                                                aaTTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgctcgatctcacaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaa                                                                                                                                    <  2:1149817‑M1/206‑73 (MQ=255)                                                                                                     gcgcTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgc                                                                                                                                                                                                      <  2:493478‑M1/135‑7 (MQ=255)                                                                                                                             cGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttc                                                                                                                                                                      <  2:1029209‑M1/143‑39 (MQ=255)                                                                                                                                         aGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgact                                                                             <  2:398376‑M1/220‑128 (MQ=255)                                                                                                                                             ccTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggc                                                                                           <  2:953868‑M1/202‑114 (MQ=255)                                                                                                                                                 ggAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaagg                                                                                            <  1:703288‑M1/197‑113 (MQ=255)                                                                                                                                                           gCCGGGGGATTTGCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgttt                                                                                                                                                                       <  2:362572‑M1/112‑38 (MQ=255)                                                                                                                                                                   aggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttACCCGCGACGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCt                                                                                                                                                 >  2:250479‑M1/61‑126 (MQ=255)                                                                                                                                                                      gtcAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgc                                                                                 <  1:21217‑M1/186‑124 (MQ=255)                                                                                                                                                                       agtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAAt                                                                      <  2:1213167‑M1/141‑1 (MQ=255)                                                                                                                                                                       agtcgcgcgcgactgctgcaggagggactggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAAt                                                                      >  1:1213170‑M1/57‑197 (MQ=255)                                                                                                                                                                           gcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACaaa                                                           <  1:176703‑M1/152‑1 (MQ=255)                                                                                                                                                                                              gggactggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACAAACTCTTACTACTCCTGACCCACCCCCAaca        <  1:1204623‑M1/203‑1 (MQ=255)                                                                                                                                                                                              gggactggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACAAACTCTTACTACACCTGACCCACCCCCaa          <  1:659578‑M1/201‑1 (MQ=255)                                                                                                                                                                                                    ggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCACAATTcc                                                                                                                  <  2:937869‑M1/97‑1 (MQ=255)                                                                                                                                                                                                    ggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgc                                                                                                             <  1:420112‑M1/102‑1 (MQ=255)                                                                                                                                                                                                    ggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgc                                                                                                             >  2:420109‑M1/28‑129 (MQ=255)                                                                                                                                                                                                    ggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCaa                                                                                                  <  2:409927‑M1/113‑1 (MQ=255)                                                                                                                                                                                                    ggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCt                                                                             <  1:164596‑M1/134‑1 (MQ=255)                                                                                                                                                                                                    ggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACAAACTCTTACTACTCCTGACCCACCCCCAACACCcgcg  <  1:1246008‑M1/209‑1 (MQ=255)                                                                                                                                                                                                                     aTCGAGCGCCGCCCGCGcggcgctcgatctcacagg                                                                                                                                                                                         >  2:503559‑M1/1‑17 (MQ=255)                                                                                                                                                                                                                        gAGCGCCGCCCGCGcggcgcttcgcgggtaa                                                                                                                                                                                           <  2:269208‑M1/31‑18 (MQ=255)                                                                                                                                                                                                                            gccgccCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggcca                                                         <  1:506724‑M1/157‑148 (MQ=255)                                                                                                                                                                                                                            gccgccCGCGcgccgcttcgcgggtaaacccgctcctacgtttgtttcggcc                                                                                                                                                                  <  2:137619‑M1/52‑43 (MQ=255)                                                                                                                                                                                                                                 ccgcCcggggcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcg                                                                                      <  2:749077‑M1/123‑119 (MQ=255)                                                                                                                                                                                                                                  cgcgAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCCGAACa                                       >  2:560203/1‑169 (MQ=255)                                                                                                                                                                                                                                     |                                                                                                                                                                                                           AAAAGCTGACCTTGGCGTCAACTTTACAGCAATTGGGTGGGTAGAGGCAAAGTCAAGCTGACAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACAAACTCTTACTACTCCTGACCCACCCCCAACACCCGCG  >  AE015451/4807951‑4808381

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.