New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 499202	50 (0.730)	6 (0.090) +GGGCATGCCC	6/318	NT	11.3%	intergenic (+46/‑250)	uhpA/PP_0411	DNA‑binding response regulator UhpA/Polyamine ABC transporter, ATP‑binding protein
	?	AE015451	= 499202	50 (0.730)					intergenic (+46/‑250)	uhpA/PP_0411	DNA‑binding response regulator UhpA/Polyamine ABC transporter, ATP‑binding protein

TCGGAGCGGGAATTTTCGGTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCAGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCCTACGCAGTCATCCA  >  AE015451/498974‑499435                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                          tcGGAGCGGGAATTTTCGGTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGATGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGAgggc                                                                                                                                                                                                                                       <  1:182241‑M2/233‑5 (MQ=255)  cGGAGCGGGAATTTTCGGTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatgc                                                                                                                                                                                                                                   >  1:551419‑M1/1‑228 (MQ=255)       cGGGAATTTTCGGTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatgcccgc                                                                                                                                                                                                                               <  2:1178092‑M1/235‑13 (MQ=255)       cGGGAATTTTCGGTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatgcccgc                                                                                                                                                                                                                               <  1:930421‑M1/235‑13 (MQ=255)       cGGGAATTTTCGGTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatgccc                                                                                                                                                                                                                                 <  2:710137‑M2/233‑11 (MQ=255)        gggAATTTTCGGGGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgg                                                                                                                                                                                                                                         >  1:1037086‑M2/1‑222 (MQ=255)          gAATTTTCCGTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatgcccgc                                                                                                                                                                                                                               <  2:555278‑M1/232‑13 (MQ=255)           aaTTTTCGGTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACg                                                                                                                                                                                                                          <  1:910430/236‑1 (MQ=255)                  ggTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgggca                                                                                                                                                                                                                                      >  1:334903‑M2/1‑212 (MQ=255)                       tCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGgcctggcctg                                                                                                                                                                                                               <  1:475374/235‑1 (MQ=255)                                     cAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatgcc                                                                                                                                                                                                                                  >  2:303397‑M1/1‑193 (MQ=255)                                        ggCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACg                                                                                                                                                                                                                          <  1:122024/207‑1 (MQ=255)                                         gcgcCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCg                                                                                                                                                                                                                                          <  1:337875‑M2/190‑2 (MQ=255)                                               aCGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatgcccgctcccacataggcttcggcaagtttcgggcacccgtatgtc                                                                                                                                                                                       <  1:710140‑M1/235‑53 (MQ=255)                                               aCGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCct                                                                                                                                                                                      >  1:1197384/1‑236 (MQ=255)                                                cGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCgg                                                                                                                                                                                         >  1:1280430/1‑234 (MQ=255)                                                          aTCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCctct                                                                                                                                                                                    <  1:786527/227‑1 (MQ=255)                                                             gCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatgcccgcgaccgggc                                                                                                                                                                                                                       >  2:225960‑M1/1‑169 (MQ=255)                                                              cccAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGATCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCct                                                                                                                                                                                      >  1:23574/1‑221 (MQ=255)                                                                        ggCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatg                                                                                                                                                                                                                                    <  1:1243020‑M1/165‑8 (MQ=255)                                                                              gTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGc                                                                                                                                                                        <  1:101328/219‑1 (MQ=255)                                                                               tCGAGCAAGACCATCAGCACCCGCAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACGCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGgcctggcctg                                                                                                                                                                                                               <  1:239591/179‑1 (MQ=255)                                                                                cGAGCAAGACCATCAGCCCCCACAAGGCGCGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatgcccgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcag                                                                                                                                                                               <  1:231558‑M1/210‑61 (MQ=255)                                                                                cGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACCGGTTTcc                                                                                                                                                      >  1:1154704/1‑234 (MQ=255)                                                                                 gAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTa                                                                                                                                                                                                     >  2:1253469/1‑187 (MQ=255)                                                                                 gAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTcat                                                                                                                                                     <  1:26210/235‑3 (MQ=255)                                                                                          cATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGGGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatgcccgc                                                                                                                                                                                                                               <  2:417742‑M2/152‑13 (MQ=255)                                                                                                cACCCACAAGGTACGGCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGggcct                                                                                                                                                                                                                     <  2:354020/156‑1 (MQ=255)                                                                                                 aCCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTa                                                                                                                                                                                                     <  2:531964/171‑1 (MQ=255)                                                                                                   ccACAAGGCACGCCTGATGCAGAAGGTGAAAGTGATCTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGggcctggc                                                                                                                                                                                                                  <  2:151301/156‑1 (MQ=255)                                                                                                    cacaAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatgcccgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctcc                                                                                                                                                                <  1:930662‑M1/205‑76 (MQ=255)                                                                                                    cacaAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGc                                                                                                                                                                        <  1:1134073/197‑1 (MQ=255)                                                                                                       aaGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCct                                                                                                                                                                                      >  1:1033123/1‑180 (MQ=255)                                                                                                        aGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatgcccgcg                                                                                                                                                                                                                              >  2:464023‑M1/1‑126 (MQ=255)                                                                                                          gCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCaa                                                                                                                                        <  1:736539/223‑1 (MQ=255)                                                                                                             cGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCGGGCCTGCTGATCTCTATgg                                                                                                                                                                                                  >  1:366947/1‑162 (MQ=255)                                                                                                                  gATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGggcct                                                                                                                                                                                                                     <  2:293632/138‑1 (MQ=255)                                                                                                                    tGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGAGCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGATCgggcatgcccgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatc                                                                                                                                                                            >  1:390326‑M2/1‑114 (MQ=255)                                                                                                                         aaGTTGAAAGTGAACTCGCTGGCGGGGCGGGTGAAGTACGCCATG‑‑GAGCACAAGCGGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATcc                                                                                                                          <  1:120534/222‑1 (MQ=255)                                                                                                                          aGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAgg                                                                                                           <  1:727385/236‑1 (MQ=255)                                                                                                                             cgaAAGGGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatgcccgctcccacataggcttcggcaagtttc                                                                                                                                                                                                      <  2:783725‑M1/141‑38 (MQ=255)                                                                                                                                  gggAACTCGCTGGCGGAGCGGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGt                                                                                                                                                  <  2:585480/187‑1 (MQ=255)                                                                                                                                        tCGCTGGCGGGGCTGTGGAAGTACGCCAGG‑‑GAGCACAAGCTGATCTGAGTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGgcctggcctg                                                                                                                                                                                                               <  2:247823/122‑1 (MQ=255)                                                                                                                                           cgtgCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGggcct                                                                                                                                                                                                                     <  2:186117/110‑1 (MQ=255)                                                                                                                                             ggCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTcgcg                                                                                                                                                                               <  1:1122075/149‑1 (MQ=255)                                                                                                                                                   gCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGAGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGt                                                                                                                                                  <  2:1033780/172‑1 (MQ=255)                                                                                                                                                       gTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTg                                                                                                               >  2:912423/1‑203 (MQ=255)                                                                                                                                                           aGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTc                                                                                                                                <  1:33441/182‑1 (MQ=255)                                                                                                                                                               cGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCg                                                                                                                                                                     >  2:396907/1‑141 (MQ=255)                                                                                                                                                                 ccATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCGGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCg                                                                                                                        <  2:466209/184‑1 (MQ=255)                                                                                                                                                                  cagg‑‑gagcACAAGCTGATCTGATTGCGACGTACGGGGGCCCGAACCTTGCCGAAG‑CCTATGTGGGAGCggccatgcccgctcccacataggcttcggcaagtttcgg                                                                                                                                                                                                    <  2:967346‑M1/104‑40 (MQ=255)                                                                                                                                                                  cATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTacaaca                                                                                            >  1:953142/1‑211 (MQ=255)                                                                                                                                                                   agg‑‑gAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCctct                                                                                                                                                                                    <  2:1267653/120‑1 (MQ=255)                                                                                                                                                                   aTG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGTATTCCAATCCCg                                                                                                                        <  1:1210630/182‑1 (MQ=255)                                                                                                                                                                     g‑‑gAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatgcccgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcaacttctgcatcaggcgtgccttgtg                                                                                               <  1:930662‑M2/205‑141 (MQ=255)                                                                                                                                                                        gAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCTGATG‑CCTATGTGTGAGCGGTCATGCCCGCGAACGGTCCTGGCCTGCTGATCTCTCTGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGTTCCCACTGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCg                                                                                                                        <  2:1203661/179‑1 (MQ=255)                                                                                                                                                                          gCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCAGGCCCGCTCCCACAGGtcg                                                                                                                                                        >  2:33441/1‑143 (MQ=255)                                                                                                                                                                            acaAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAgg                                                                                                           <  1:1208595/189‑1 (MQ=255)                                                                                                                                                                            acaAGCTGATCTGATTGCGACATACGGGTGCCAGAAACTTGCCGAAGCCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAgg                                                                                                           >  2:1208592/1‑189 (MQ=255)                                                                                                                                                                               agatgagctgatTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAgg                                                                                                           <  1:1211782/182‑1 (MQ=255)                                                                                                                                                                                 ctgatctgatTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCTCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTAcccc                                                      >  1:178430/1‑236 (MQ=255)                                                                                                                                                                                   gatctgatTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatgcccgatcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagctcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcaacttctgca                                                                                                               >  1:390326‑M1/1‑53 (MQ=255)                                                                                                                                                                                      ctgatTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatgcccgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcaacttctgcatcaggcgcgccttgtgggggctgatggtcttgctcg                                                                           <  1:231558‑M2/210‑161 (MQ=255)                                                                                                                                                                                           tGCGCCATCCGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGCTCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATg                                                                                                                                                                         <  2:165708/111‑1 (MQ=255)                                                                                                                                                                                             cGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatg                                                                                                                                                                                                                                    <  2:1188160‑M1/50‑8 (MQ=255)                                                                                                                                                                                             cGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCAtt                                                                                                                                 <  2:1023838/149‑1 (MQ=255)                                                                                                                                                                                              gACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatgcccgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcaacttctgcatcaggcgtgccttgtgggtgctgatggtcttgctcgacagcgccaactgctgggcgatgtcgttgacgt                                          <  1:710140‑M2/235‑194 (MQ=255)                                                                                                                                                                                              gACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatgc                                                                                                                                                                                                                                   >  2:307911‑M1/1‑42 (MQ=255)                                                                                                                                                                                               aCATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCa                                                                     >  2:480044/1‑207 (MQ=255)                                                                                                                                                                                                  tACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAgg                                                                                                           <  1:871501/166‑1 (MQ=255)                                                                                                                                                                                                      ggTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGt                                  >  1:1112751/1‑235 (MQ=255)                                                                                                                                                                                                           ccGAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatggccgctcccacataggcttcggcaaggttcgggcccccgtacgtcgcaatcagatcagcttgtgctccctg                                                                                                                                                             <  2:967346‑M2/107‑79 (MQ=255)                                                                                                                                                                                                             gAAACTTGCCGAAG‑CCTATGTGGGAGCgggcatgcccgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttccctttcg                                                                                                                        <  2:783725‑M2/142‑116 (MQ=255)                                                                                                                                                                                                             gAAACTTGCCGAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGgatgac                                                                         >  2:869736/1‑188 (MQ=255)                                                                                                                                                                                                                  ttGCCGAGG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGGGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCaa                                                                                                                             <  2:125484/132‑1 (MQ=255)                                                                                                                                                                                                                       gAAG‑CCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGGCGGCCTCTTCGCGGGCATGCCCGCTCCCCCAGGTTTCGGGGGTGGCTCGCAAGGGCa                                                                                                                                   >  2:158221/1‑121 (MQ=38)                                                                                                                                                                                                                            ccTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCg                                                                                                                        <  1:966605/128‑1 (MQ=255)                                                                                                                                                                                                                             cTATGTGGGGGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCCTACGc           <  1:303398/236‑1 (MQ=255)                                                                                                                                                                                                                               gcccggtcgcgggcatgcccgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcaacttctgcatcaggcgtgccttgtgggtgctgatggtcttgctcgacagcgccaactgctgggc                                                        >  2:225960‑M2/9‑10 (MQ=255)                                                                                                                                                                                                                                      cgcgggcatgcccgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcaacttctgcatcaggcgtgcct                                                                                                   >  2:464023‑M2/2‑3 (MQ=255)                                                                                                                                                                                                                                       gCgggcatgcccgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcaacttctgcatcaggcgtgccttgtgggtgctgatggtcttgctcgacagcgccaactgctgggcgatgtcgttgacgttggcgccctgggccaggcgctcgaacacggaaaattc     <  2:555278‑M2/232‑231 (MQ=255)                                                                                                                                                                                                                                       gCgggcatgcccgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcaacttctgcatcaggcgtgccttgtgggtgctgatggtcttgctcgacagcgccaactgctgggcgatgtcgttgacgttggcgccctgggccaggcgctcgaacaccgaaaattcccg  <  1:930421‑M2/235‑234 (MQ=255)                                                                                                                                                                                                                                       gCgggcatgcccgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcaacttctgcatcaggcgtgccttgtgggtgctgatggtcttgctcgacagcgccaactgctgggcgatgtcgttgacgttggcgccctgggccaggcgctcgaacaccgaaaattcccg  <  2:1178092‑M2/235‑234 (MQ=255)                                                                                                                                                                                                                                       gCgggcatgcccgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagccccgccagcgagttcactttcaacttctgcatcaggcgtgccttgtgggtgctgatg                                                                                     <  2:417742‑M1/152‑151 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                          TCGGAGCGGGAATTTTCGGTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG‑‑GAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAG‑CCTATGTGGGAGCAGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCCTACGCAGTCATCCA  >  AE015451/498974‑499435

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.