Predicted mutation
evidence seq id position mutation freq annotation gene description
JC AE015451 4,808,175 Δ14 bp 100% intergenic (‑284/‑258) PP_4234 ← / → dsbD‑II Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 48081740 (0.000)8 (0.120) 8/322 NT 100% intergenic (‑283/‑272) PP_4234/dsbD‑II Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2
?AE015451 4808189 = 0 (0.000)intergenic (‑298/‑257) PP_4234/dsbD‑II Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2

CTTGGCGTCAACTTTACAGCAATTGGGTGGGTAGAGGCAAAGTCAAGCTGACAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACAAACTCTTACTACTCCTGACCCACCCCCAACACCCGCG  >  AE015451/4807961‑4808381
                                                                                                                                                                                                                                    |                                                                                                                                                                                                
tgagaaaagctgaccttggcgtcaactttacagcaattgggtgggtagaggcaaagtcaagctgacaatgtgtcgcggtgtgtatagggcaatgggcggaattcgcgctttggcgggtaggtgtttggcgggaggttttcagcgcctgggaggtgttcgccgggggattttcagcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcgcgggcg                                                                                                                                                                                            <  1:858548‑M2/7‑1 (MQ=255)
                                       ggtgggtagaggcaaagtcaagctgacaatgtgtcgcggtgtgtatagggcaatgggcggaattcgcgctttggcgggtaggtgtttggcgggaggttttcagcgcctgggaggtgttcgccgggggattttcagcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcgc                                                                                                                                                                                                 >  2:60456‑M2/190‑191 (MQ=255)
                                                 ggcaaagtcaagctgacaatgtgtcgcggtgtgtatagggcaatgggcggaattcgcgctttggcgggtaggtgtttggcgggaggttttcagcgcctgggaggtgttcgccgggggattttcagcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCt                                                                                                                                                 <  1:935948‑M2/50‑1 (MQ=255)
                                                                       gtcgcggtgtgtatagggcaatgggcggaattcgcgctttggcgggtaggtgtttggcgggaggttttcagcgcctgggaggtgttcgccgggggattttcagcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcGCGGGCGGCGCTCGAtct                                                                                                                                                                                 >  1:350708‑M2/158‑175 (MQ=255)
                                                                                             gggcggaattcgcgctttggcgggtaggtgtttggcgggaggttttcagcgccttggaggtgttcgccggggaattttcagggcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcGCGGGCGGCGCTGGATCTCACaggg                                                                                                                                                                          >  1:1203400‑M2/136‑159 (MQ=255)
                                                                                               gcggaattcgcgctttggcgggtaggtgtttggcgggaggttttcagcgcctgggaggtgttcgccgggggattttcagcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAacac                                                                                                                                                   >  2:1216351‑M2/134‑181 (MQ=255)
                                                                                                                                                        aggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttACCCGCGACGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCt                                                                                                                                                 >  2:250479‑M1/61‑126 (MQ=255)
                                                                                                                                                            agtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAAt                                                                      <  2:1213167‑M1/141‑1 (MQ=255)
                                                                                                                                                            agtcgcgcgcgactgctgcaggagggactggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAAt                                                                      >  1:1213170‑M1/57‑197 (MQ=255)
                                                                                                                                                                gcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACaaa                                                           <  1:176703‑M1/152‑1 (MQ=255)
                                                                                                                                                                              cgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACAAACTCTTACTACTCCTGacc                   <  1:60456‑M2/176‑1 (MQ=255)
                                                                                                                                                                                 ctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGa                                                         >  2:454781‑M2/52‑189 (MQ=255)
                                                                                                                                                                                   gggactggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACAAACTCTTACTACTCCTGACCCACCCCCAaca        <  1:1204623‑M1/203‑1 (MQ=255)
                                                                                                                                                                                   gggactggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACAAACTCTTACTACACCTGACCCACCCCCaa          <  1:659578‑M1/201‑1 (MQ=255)
                                                                                                                                                                                         ggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCACAATTcc                                                                                                                  <  2:937869‑M1/97‑1 (MQ=255)
                                                                                                                                                                                         ggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgc                                                                                                             <  1:420112‑M1/102‑1 (MQ=255)
                                                                                                                                                                                         ggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgc                                                                                                             >  2:420109‑M1/28‑129 (MQ=255)
                                                                                                                                                                                         ggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCaa                                                                                                  <  2:409927‑M1/113‑1 (MQ=255)
                                                                                                                                                                                         ggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCt                                                                             <  1:164596‑M1/134‑1 (MQ=255)
                                                                                                                                                                                         ggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACAAACTCTTACTACTCCTGACCCACCCCCAACACCcgcg  <  1:1246008‑M1/209‑1 (MQ=255)
                                                                                                                                                                                                                      agatcaagcgccgcGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAACTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAAt                                                                      <  2:640819‑M2/125‑1 (MQ=255)
                                                                                                                                                                                                                       cgcgAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCCGAACa                                       >  2:560203/1‑169 (MQ=255)
                                                                                                                                                                                                                           gagcgccgcGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACAAActct                                 <  1:112056‑M2/162‑1 (MQ=255)
                                                                                                                                                                                                                           aaGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCcaaca                                                                <  2:344212/140‑1 (MQ=255)
                                                                                                                                                                                                                                    |                                                                                                                                                                                                
CTTGGCGTCAACTTTACAGCAATTGGGTGGGTAGAGGCAAAGTCAAGCTGACAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACAAACTCTTACTACTCCTGACCCACCCCCAACACCCGCG  >  AE015451/4807961‑4808381

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.