New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4945209	47 (0.680)	9 (0.140)	8/320	NT	15.3%	intergenic (+569/+229)	PP_5673/flhB	putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein
	?	AE015451	4945455 =	55 (0.850)					coding (1126/1143 nt)	flhB	flagellin export apparatus, substrate specificity protein

TTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCA  >  AE015451/4945233‑4945685                                                                                                                                                                                                                               |                                                                                                                                                                                                                                       tttGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGAt                                                                                                                                                                                                                            >  1:527280/1‑235 (MQ=255)     tttCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGc                                                                                                                                                                                                                        >  1:968531/1‑235 (MQ=255)       tCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGGTCTCACAGGCAACGCAAACCTATCTCCGAACAGATCAACTGTCGCGGCGCAg                                                                                                                                                                                                                                        >  1:77221/1‑217 (MQ=255)       tCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTcc                                                                                                                                                                                                                                    >  1:772082/1‑221 (MQ=255)         gggCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGgtc                                                                                                                                                                                                                   >  2:872756/1‑236 (MQ=255)             cAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGGCCGGCGGGGGCGGCgggg                                                                                                                                                                                                                    >  1:106783/1‑230 (MQ=255)                ttATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCa                                                                                                                                                                                                                       <  2:527277/225‑1 (MQ=255)                             aTTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTg                                                                                                                                                                                                        >  1:862412/1‑227 (MQ=255)                             aTTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCCCAGGTCCGGCGGGATCGGCAGgt                                                                                                                                                                                                                    >  1:9903/1‑215 (MQ=255)                                         ccGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCCCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGGTCAACTGTCGCGGCGCAGGTCcggcgg                                                                                                                                                                                                                               >  1:575275/1‑192 (MQ=255)                                                               atTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGACCGGCGGGATCGGCCGGGCGCCCATCacgg                                                                                                                                                                                                        >  2:252078/1‑190 (MQ=255)                                                                gatccaccgcgagtcctcttgatgcaaaactttgacgcccagggggcgcctgcggctggcattgctagaagctttccaactttgtgatctgctgtgaatcggggtgttcgccgtgaggtttttgtcgcctgtgagatcgagcgccgcccgcgcggcgcaGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTgg                                                                                                                                                            >  1:717993‑M2/160‑236 (MQ=255)                                                                    gcCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAac                                                                                                                                                         >  1:767969/1‑235 (MQ=255)                                                                      cGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCTGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGacc                                                                                                                                                         <  2:767966/233‑3 (MQ=255)                                                                      cGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGctc                                                                                                                                                                                                    >  2:809997/1‑190 (MQ=255)                                                                      cGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAacac                                                                                                                                                       >  1:1233890/1‑235 (MQ=255)                                                                           aaacaaGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTAtt                                                                                                                                                                       >  1:711893/1‑214 (MQ=255)                                                                           aaacaaGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGGATCTGGAACACATACg                                                                                                                                                  >  1:562530/1‑235 (MQ=255)                                                                                     gTCGCGCGCGCCGGGTACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAgg                                                                                                                                                                                                                                       >  2:583177/1‑140 (MQ=255)                                                                                     gTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGa                                                                                                                                                                                                                             >  2:518595/1‑150 (MQ=255)                                                                                     gTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGACTCTGGAACACATACGc                                                                                                                                                 >  1:855948/1‑226 (MQ=255)                                                                                     gTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTg                                                                                                                                        >  1:954389/1‑235 (MQ=255)                                                                                     gTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGAGCAACTGTCGCGGCGCAGGCCCGGCgggg                                                                                                                                                                                                                             >  2:195053/1‑149 (MQ=255)                                                                                          gcgcgcCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACAt                                                                                                                                                     >  2:896539/1‑217 (MQ=255)                                                                                          gcgcgcCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCCCCTg                                                                                                                                        >  2:1244458/1‑230 (MQ=255)                                                                                                cGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAg                                                                                                                            <  1:872759/236‑1 (MQ=255)                                                                                                   gCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCa                                                                                                                                                                                                                       >  2:1019562/1‑142 (MQ=255)                                                                                                           ataaCTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGct                                                                                                                                                                                            >  2:951713/4‑161 (MQ=255)                                                                                                               gcctgcggctggcattgctagaagctttccaactttgtgatctgctgtgaatcggggtgttcgccgtgaggtttttgtcgcctgtgagatcgagcgccgcccgcgcggcgcaGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAg                                                                                                                            <  2:811021‑M2/109‑1 (MQ=255)                                                                                                               cTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGcccc                                                                                                                                  >  2:1104961/1‑213 (MQ=255)                                                                                                                 ggCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCg                                                                                                                                                                                                                          >  1:182819/1‑125 (MQ=255)                                                                                                                    ccGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGcc                                                                                                                                                >  1:994771/1‑196 (MQ=255)                                                                                                                    ccGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGAtct                                                                                                        >  1:661909/1‑236 (MQ=255)                                                                                                                      gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCAc                                                                                                                                  >  2:962881/1‑208 (MQ=255)                                                                                                                      gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGAtct                                                                                                        >  1:519743/1‑234 (MQ=255)                                                                                                                        aaCAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGct                                                                                                                                                                                                     >  2:1000650/1‑139 (MQ=255)                                                                                                                          cAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGcccc                                                                                                                  <  1:1070906/220‑1 (MQ=255)                                                                                                                          cAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGcccc                                                                                                                  >  2:1070903/1‑220 (MQ=255)                                                                                                                                    agcgagcTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCg                                                                                          <  2:1233887/234‑1 (MQ=255)                                                                                                                                     gcgagcTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGaa                                                                                                                                                                 >  1:1107162/1‑162 (MQ=255)                                                                                                                                     gcgagcTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGaa                                                                                                                                                                 <  2:1107159/162‑1 (MQ=255)                                                                                                                                         gcTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTg                                                                                                    >  2:626166/1‑219 (MQ=255)                                                                                                                                         gcTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGt                                                                                   >  1:708675/1‑236 (MQ=255)                                                                                                                                           ttGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAggg                                                                                                                                                                                                                    >  2:246761/1‑104 (MQ=255)                                                                                                                                           ttGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGgcgc                                                                                                                                                                             >  2:1022172/1‑144 (MQ=255)                                                                                                                                           ttGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTc                                                                                           >  1:814980/1‑226 (MQ=255)                                                                                                                                             tgagatcgagcgcCGCCCGCGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGTAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTTGAGTAAt                                                                                >  1:491215/10‑235 (MQ=255)                                                                                                                                             aactttgtgatctgctgtgaatcggggtgttcgccgtgaggtttttgtcgcctgtgagatcgagcgccgcccgcgcggcgcaGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTggg                                                                                                                                                                                                <  1:523249‑M2/41‑1 (MQ=255)                                                                                                                                             aactttgtgatctgctgtgaatcggggtgttcgccgtgaggtttttgtcgcctgtgagatcgagcgccgcccgcgcggcgcaGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTggg                                                                                                                                                                                                >  2:523246‑M2/83‑123 (MQ=255)                                                                                                                                             aactttgtgatctgctgtgaatcggggtgttcgccgtgaggtttttgtcgcctgtgagatcgagcgccgcccgcgcggcgcaGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTaa                                                                                 >  2:657349‑M2/83‑234 (MQ=255)                                                                                                                                                cgcgATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCCGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTg                                                                                       >  2:390773/1‑225 (MQ=255)                                                                                                                                                 gcgAGGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCAcc                                                                                                                                 <  1:601901/182‑1 (MQ=255)                                                                                                                                                    cggcgcCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGcttgcccttgcc                                                                                                                                                                                  <  1:1152358/128‑1 (MQ=255)                                                                                                                                                                 atcggggtgttcgccgtgaggtttttgtcgcctgtgagatcgagcgccgcccgcgcggcgcaGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGAt                                                                                                          >  1:968273‑M2/63‑189 (MQ=255)                                                                                                                                                                   cggggtgttcgccgtgaggtttttgtcgcctgtgagatcgagcgccgcccgcgcggcgcaGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGct                                                                                                                                                                                                     >  1:948845‑M2/61‑96 (MQ=255)                                                                                                                                                                   cggggtgttcgccgtgaggtttttgtcgcctgtgagatcgagcgccgcccgcgcggcgcaGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGct                                                                                                                                                                                                     <  2:948842‑M2/36‑1 (MQ=255)                                                                                                                                                                       cTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTAGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAac                                                                                                                                                         <  2:505738/136‑1 (MQ=255)                                                                                                                                                                         cGATCTCACAGGCAACGCAAACCTATCGCCGAACGGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGAt                                                      <  2:544765/233‑1 (MQ=255)                                                                                                                                                                          gATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGAt                                                      <  1:539333/232‑1 (MQ=255)                                                                                                                                                                              tcACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGGCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGtg                                                                                                                         >  2:467906/1‑160 (MQ=255)                                                                                                                                                                                  aGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCt                                                                                                                                                              <  2:1267790/120‑1 (MQ=255)                                                                                                                                                                                  aGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCt                                                                                                                                                              >  1:1267793/1‑120 (MQ=255)                                                                                                                                                                                  aGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCt                                            >  2:632477/1‑234 (MQ=255)                                                                                                                                                                                            tcgcctgtgagatcgagcgccgcccgcgcggcgcaGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCt                                                                                                                                         <  2:951165‑M2/96‑1 (MQ=255)                                                                                                                                                                                                    gCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAGTCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGtt                                                                                            <  1:467909/168‑1 (MQ=255)                                                                                                                                                                                                        aaCAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGa                                                  <  1:905029/206‑1 (MQ=255)                                                                                                                                                                                                               cAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAAt             >  1:403463/1‑236 (MQ=255)                                                                                                                                                                                                                 gcccgcgcggcgcaGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCg                                                                                          <  1:136336‑M2/143‑1 (MQ=255)                                                                                                                                                                                                                     gcgcggcgcaGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCtt          <  1:522973‑M2/223‑1 (MQ=255)                                                                                                                                                                                                                       gcggcgcaGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGtt                                                                                            <  2:717990‑M2/141‑1 (MQ=255)                                                                                                                                                                                                                          gcgcaGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCa  <  1:657352‑M2/231‑1 (MQ=255)                                                                                                                                                                                                                           cgcaGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGcc                                                                                                                                                <  1:1282803‑M2/89‑1 (MQ=255)                                                                                                                                                                                                                           cgcaGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGcc                                                                                                                                                >  2:1282800‑M2/5‑93 (MQ=255)                                                                                                                                                                                                                           cgcaGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTaa                                                                                 >  2:943248‑M2/5‑156 (MQ=255)                                                                                                                                                                                                                             caGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCa  <  2:772079‑M2/231‑1 (MQ=255)                                                                                                                                                                                                                               |                                                                                                                                                                                                                                       TTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCA  >  AE015451/4945233‑4945685

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.