Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	1841719	1841978	260	23 [22]	[22] 23	ldhA	D‑lactate dehydrogenase

CGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGTGCGGTTGTAGGCCCGATGCAGACGCCGGTTGAGTGCCAGGATGAGCGCCACGGCATGCTCGGCAACGGCGTGTGGCGAGTAGGCCGGCACCCGCACCACGGCCAGCCCCAAGCGCTGGGCGGCGGCCAGGTCGACGTGGTTGTAGCCGGCCGAGCGCAGGGCGATCAACCGCGTGCCAGCGGCGGCCAGGCGCTGCAGCACCGGCGCGTCGAGTTCGTCATTGATGAAGGCGCAGACCACCTCAAAGCCATCTGCCA  >  AE015451/1841507‑1841842                                                                                                                                                                                                                    |                                                                                                                             cGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGTGCGGTTGTAGGCCCGATGCAGACGCCGGTTGAGTGCCAGGATGAGCGCCACGGCATGCTCGGCAACGGCGTGTGGCGAGTAGGCCGGCACCCGCACCACGGCCAGCCCCAAGCGCTGGGCGGCGGCCAGGTCGACGTGGTTGTAGCCGGCCGAgcgc                                                                                                      <  1:535024/236‑1 (MQ=255)            accCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGTGCGGTTGTAGGCCCGATGCAGACGCCGGTTGAGTGCCAGGATGAGCGCCACGGCATGCTCGGCAACGGCGTGTGGCGAGTAGGCCGGCACCCGCACCACGGCCAGCCCCAAGCGCTGGGCGGCGGCCAGGTCGa                                                                                                                             >  2:599071/1‑202 (MQ=255)                 gACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGTGCGGTTGTAGGCCCGATGCAGACGCCGGTTGAGTGCCAGGATGAGCGCCACGGCATGCTCGGCAACGGCGTGTGGCGAGTAGGCCGGCACCCGCACCACGGCCAGCCCCAAGCGCTGGGCGGCGGCCAGGTCGACGTGGTTGTAGCCGGCCGAGCGCAGGGCGATCAAcc                                                                                         >  2:699124/1‑233 (MQ=255)                    ggTTTTCCGGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGTGCGGTTGTAGGCCCGATGCAGACGCCGGTTGAGTGCCAGGATGAGCGCCACGGCATGCTCGGCAACGGCGTGTGGCGAGTAGGCCGGCACCCGCACCACGGCCAGCCCCAAGCGCTGGGCGGCGGCCAGGTCGACGTGGTTGTAgcc                                                                                                                <  1:1086856/207‑1 (MQ=255)                              tGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGTGCGGTTGTAGGCCCGATGCAGACGCCGGTTGAGTGCCAGGATGAGCGCCACGGCATGCTCGGCAACGGCGTGTGGCGAGTAGGCCGGCACCCGCACCACGGCCAGCCCCAAGCGCTGGGCGGCGGCCAGGTCGACGTGGTTGTAGCCGGCCGAGCGCAGGGCg                                                                                                <  1:823928/213‑1 (MQ=255)                                           cGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGTGCGGTTGTAGGCCCGATGCAGACGCCGGTTGAGTGCCAGGATGAGCGCCACGGCATGCTCGGCAACGGCGTGTGGCGAGTAGGCCGGCACCCGCACCACGGCCAGCCCCAAGCGCTGGGCGGCGGCCAGGTCGACGTGGTTGTAGCCGGCCGAgc                                                                                                        <  2:987627/192‑1 (MQ=255)                                                                                      gTAGGCCCGATGCAGACGCCGGTTGAGTGCCAGGATGAGCGCCACGGCATGCTCGGCAACGGCGTGTGGCGAGTAGGCCGGCACCCGCACCACGGCCAGCCCCAAGCGCTGGGCGGCGGCCAGGTCGACGTGGTTGTAGCCGGCCGAGCGCAGGGCGATCAACCGCGTGCCAGCGGCGGCCAGGCGCTGCAGCACCGGCGCGTCGAGTTCGTCATTGATGAAGGCGCAGaccacc                  <  1:634261/235‑1 (MQ=255)                                                                                      gTAGGCCCGATGCAGACGCCGGTTGAGTGCCAGGATGAGCGCCACGGCATGCTCGGCAACGGCGTGTGGCGAGTAGGCCGGCACCCGCACCACGGCCAGCCCCAAGCGCTGGGCGGCGGCCAGGTCGACGTGGTTGTAGCCGGCCGAGCGCAGGGCGATCAACCGCGTGCCAGCGGCGGCCAGGCGCTGCAGCACCGGCGCGTCGAGTTCGTCATTGATGAAGGCGCAGACCACCt                 <  1:699127/236‑1 (MQ=255)                                                                                               aTGCAGACGCCGGTTGAGTGCCAGGATGAGCGCCACGGCATGCTCGGCAACGGCGTGTGGCGAGTAGGCCGGCACCCGCACCACGGCCAGCCCCAAGCGCTGGGCGGCGGCCAGGTCGACGTGGTTGTAGCCGGCCGAGCGCAGGGCGATCAACCGCGTGCCAGCGGCGGCCAGGCGCTGCAGCACCGGCGCGTCGAGTTCGTCATTGATGAAGGCGCa                         <  2:1108947/219‑1 (MQ=255)                                                                                                 gCAGACGCCGGTTGAGTGCCAGGATGAGCGCCACGGCATGCTCGGCAACGGCGTGTGGCGAGTAGGCCGGCACCCGCACCACGGCCAGCCCCAAGCGCTGGGCGGCGGCCAGGTCGACGTGGTTGTAGCCGGCCGAgcg                                                                                                       >  2:1250501/1‑139 (MQ=255)                                                                                                                         tGAGCGCCACGGCATGCTCGGCAACGGCGTGTGGCGAGTAGGCCGGCACCCGCACCACGGCCAGCCCCAAGCGCTGGGCGGCGGCCAGGTCGACGTGGTTGTAGCCGGCCGAGCGCAGGGCGATCAACCGCGTGCCAGCGGCGGCCAGGCGCTGCAGCACCGGCGCGTCGAGTTCGTCATTGATGAAg                              >  1:454334/1‑188 (MQ=255)                                                                                                                         tGAGCGCCACGGCATGCTCGGCAACGGCGTGTGGCGAGTAGGCCGGCACCCGCACCACGGCCAGCCCCAAGCGCTGGGCGGCGGCCAGGTCGACGTGGTTGTAGCCGGCCGAGCGCAGGGCGATCAACCGCGTGCCAGCGGCGGCCAGGCGCTGCAGCACCGGCGCGTCGAGTTCGTCATTGATGAAg                              <  2:454331/188‑1 (MQ=255)                                                                                                                                         cgcGGCAACGGCGTGTGGGGAGTAGGCCGGCACCCGCACCACGGCCAGCCCCAAGCGCTGGGCGGCGGCCAGGTCg                                                                                                                              <  2:157460/74‑1 (MQ=255)                                                                                                                                          tCGGCAACGGCGTGTGGCGAGTAGGCCGGCACCCGCACCACGGCCAGCCCCAAGCGCGGGGCGGCGGCCAGGTCGACGTGGTTGTAGCCGGCCGAGCGCAGGGCGATCAACCGCGTGCCAGCGGCGGCCAGGCGCTGCAGCACCGGCGCGTCGAGTTCGTCATtga                                   <  1:86624/166‑1 (MQ=255)                                                                                                                                            ggCAACGGCGTGTGGCGAGTAGGCCGGCACCCGCACCACGGCCAGCCCCAAGCGCTGGGCGGCGGCCAGGTCGACGTGGTTGTAGCCGGCCGAGCGCAGGGCGATCAACCGCGTGCCAGCGGCGGCCAGGCGCTGCAGCACCGGCGCGTCGAGTTCGTCATTGATGAAGGCGCAGACCACCTCAAAGCCATCTGCCa  <  2:1102395/197‑1 (MQ=255)                                                                                                                                                                aGGCCGGCACCCGCACCACGGCCAGCCCCAAGCGCTGGGCGGCGGCCAGGTCGACGTGGTTGTAGCCGGCCGAGCGCAGGGCGATCAACCGCGTGCCAGCGGCGGCCAGGCGCTGCAGCACCGGCGCGTCGAGTTCGTCATtga                                   >  2:998764/1‑144 (MQ=255)                                                                                                                                                                aGGCCGGCACCCGCACCACGGCCAGCCCCAAGCGCTGGGCGGCGGCCAGGTCGACGTGGTTGTAGCCGGCCGAGCGCAGGGCGATCAACCGCGTGCCAGCGGCGGCCAGGCGCTGCAGCACCGGCGCGTCGAGTTCGTCATtga                                   <  1:998767/144‑1 (MQ=255)                                                                                                                                                                          ccGCACCACGGCCAGCCCCAAGCGCTGGGCGGCGGCCAGGTCGCCGTGGTTGTAGCCGGCCGAGCGCAGGGCGATCAACCGCGTGCCAGCGGCGGCCAGGCGCTGCAGCACCGGCGCGTCGAGTTCGTCATTGATGAAg                              <  1:47640/139‑1 (MQ=255)                                                                                                                                                                                  cGGCCAGCCCCAAGCGCTGGGCGGCGGCCAGGTCGACGTGGTTGTAGCCGGCCGAGCGCAGGGCGATCAACCGCGTGCCAGCGGCGGCCAGGCGCTGCAGCACCGGCGCGTCGAGTTCGTCATtga                                   <  1:106456/126‑1 (MQ=255)                                                                                                                                                                                           ccAAGCGCTGGGCGGCGGCCAGGTCGACGTGGTTGTAGCCGGCCGAGCGCAGGGCGATCAACCGCGTGCCAGCGGCGGCCAGGCGCTGCAGCACCGGCGCGTCGAGtt                                            >  1:129216/1‑108 (MQ=255)                                                                                                                                                                                                cgcTGGGCGGCGGCCAGGTCGACGTGGTTGTAGCCGGCCGAGCGCAGGGCGATCAACCGCGTGCCAGCGGCGGCCAGGCGCTGCAGCACCGGCGCGTCGAGTTCGTCATTGATGAAGGCGCa                         >  1:705089/1‑122 (MQ=255)                                                                                                                                                                                                cgcTGGGCGGCGGCCAGGTCGACGTGGTTGTAGCCGGCCGAGCGCAGGGCGATCAACCGCGTGCCAGCGGCGGCCAGGCGCTGCAGCACCGGCGCGTCGAGTTCGTCATTGATGAAGGCGCa                         <  2:705086/122‑1 (MQ=255)                                                                                                                                                                                                        ggcggcCAGGTCGACGTGGTTGTAGCCGGCCGa                                                                                                          >  2:1179677/1‑33 (MQ=255)                                                                                                                                                                                                                    |                                                                                                                             CGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGTGCGGTTGTAGGCCCGATGCAGACGCCGGTTGAGTGCCAGGATGAGCGCCACGGCATGCTCGGCAACGGCGTGTGGCGAGTAGGCCGGCACCCGCACCACGGCCAGCCCCAAGCGCTGGGCGGCGGCCAGGTCGACGTGGTTGTAGCCGGCCGAGCGCAGGGCGATCAACCGCGTGCCAGCGGCGGCCAGGCGCTGCAGCACCGGCGCGTCGAGTTCGTCATTGATGAAGGCGCAGACCACCTCAAAGCCATCTGCCA  >  AE015451/1841507‑1841842

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑