Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	5816925	5817282	358	23 [22]	[21] 23	[pilT]	[pilT]

CCTACGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTCTTCCAGGGTAATGATGTGCAGCGCCCGCTCGCGGTTCAGCTGGTCGAGCAGCGT  >  AE015451/5817124‑5817518                                                                                                                                                                |                                                                                                                                                                                                                                            ccTACGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTg                                                                                                                                                                 >  1:794147/1‑236 (MQ=255)            gACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCTCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGgcgcagcgca                                                                                                                                                       >  1:278744/1‑235 (MQ=255)              ccAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCTCCGAACGCGCACGCACGGCTGCCAGCACCAGGCGCCCGGttt                                                                                                                                                                                                                                          >  2:323854/1‑150 (MQ=255)              ccAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTg                                                                                                                                                    >  1:1153336/1‑236 (MQ=255)                aGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCcgc                                                                                                                                                                                                                                   >  1:681432/1‑155 (MQ=255)                          cgACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAgg                                                                                                                                                                                                                      >  2:264603/1‑158 (MQ=255)                                          cGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCTCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCCTGATCa                                                                                                                                                                              >  1:219334/1‑182 (MQ=255)                                                             cGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGccc                                                                                                                                            >  1:59903/1‑197 (MQ=255)                                                              gCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCt                                                                                                      >  2:736722/1‑234 (MQ=255)                                                                             ccTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAgg                                                                                                                                                                                                                      >  1:1085879/1‑107 (MQ=255)                                                                             ccTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTgcg                                                                                      >  1:957481/1‑235 (MQ=255)                                                                                             cTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGgat                                                                       <  2:1153333/234‑1 (MQ=255)                                                                                                   caACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGa                                                               <  1:264603/236‑1 (MQ=255)                                                                                                             aTGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTc                                                        >  2:469940/1‑233 (MQ=255)                                                                                                             aTGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTCTTc                                                     >  1:588187/1‑236 (MQ=255)                                                                                                             aTGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTCTTc                                                     >  1:525380/1‑236 (MQ=255)                                                                                                                       tCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTCTTCCAGGGTAat                                            >  1:1201344/1‑235 (MQ=255)                                                                                                                                                         gTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTc                                                        >  1:736644/1‑189 (MQ=255)                                                                                                                                                         gTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTc                                                        <  2:736641/189‑1 (MQ=255)                                                                                                                                                         gTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTCTTCCAGGGTAATGATGTGCAGCGCCCGCTCGCGGTTCAGCTGGTCGa         >  1:898383/1‑236 (MQ=255)                                                                                                                                                           gCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTCTTCCAGGGTAATGATGTGCAGCGCCCGCTCGCGGTTCAGCTGGTCGag        >  1:445890/1‑235 (MQ=255)                                                                                                                                                                gTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCCCGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTCTTCCAGGGTAATGAtgt                                       >  2:149830/1‑199 (MQ=255)                                                                                                                                                                gTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTCTTCCAGGGTAATGATGTGCAGCGCCCGCTCGCGGTTCAGCTGGTCGAGCAGCGt  >  1:920621/1‑236 (MQ=255)                                                                                                                                                                |                                                                                                                                                                                                                                            CCTACGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTCTTCCAGGGTAATGATGTGCAGCGCCCGCTCGCGGTTCAGCTGGTCGAGCAGCGT  >  AE015451/5817124‑5817518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑