| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AE015451 | 201,007 | T→C | 6.5% | G2171G (GGT→GGC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451 | 201,007 | 0 | T | C | 6.5% | 225.0 / 2.4 | 71 | G2171G (GGT→GGC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (30/35); new base C (3/2); total (34/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
GCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCT > AE015451/200789‑201237 | tcTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGGCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGt < 1:82055/218‑1 (MQ=255) cTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGACGGCGGT‑‑GAGAGCa > 1:323063/1‑225 (MQ=255) aaCCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTg < 1:1256725/235‑1 (MQ=39) aGCGCGCCGTACACCCACGAAGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACcaa < 1:793435/236‑1 (MQ=39) cgcgcCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCAc < 2:1110241/213‑1 (MQ=40) gcCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGAt > 2:821010/1‑207 (MQ=39) ccGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTaca < 2:897129/214‑1 (MQ=39) agacCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACCGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGC‑‑GAGATCACCTACACCATCACGCTGACcaa > 1:643337/3‑226 (MQ=11) ccACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTg < 1:1190641/235‑1 (MQ=255) cACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTACGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGC‑‑GAGATCACCTACACCATc < 2:643334/210‑1 (MQ=11) gacgCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGt < 2:896973/189‑1 (MQ=39) gcgcAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAAGTCGTGGCGAAGCTGACCGCGACCCCTTCGGTGACCGAAGGCGGC‑‑GAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATcaa < 1:1157023/236‑1 (MQ=255) aGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGt < 2:833302/181‑1 (MQ=39) gACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGa < 1:801501/236‑1 (MQ=40) aCGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTGGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATcaa < 2:549471/223‑1 (MQ=39) gTCTATCAGGATGCGGGCCAGACCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCAc < 2:191004/179‑1 (MQ=255) tCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGCCGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGt < 2:1001568/166‑1 (MQ=39) cGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCCGTCACCGAAGGCGGC‑‑GAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCaa > 1:527886/1‑232 (MQ=2) cGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTg < 1:1009226/236‑1 (MQ=35) gggCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTg > 2:942545/1‑235 (MQ=34) cAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGTAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCAc < 2:881898/161‑1 (MQ=18) cAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACt > 2:799079/1‑211 (MQ=34) cAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTc > 2:1206798/1‑207 (MQ=35) ccTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGcacc < 1:922533/235‑1 (MQ=33) tCGGCATCACTTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAAcc < 2:528330/198‑1 (MQ=21) cACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACt < 1:256950/194‑1 (MQ=33) gTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTg < 1:825608/235‑1 (MQ=35) tacGCTATGGATGTAGACGGTCACACCTTCGAGAACATGCAACTGGGCGGCAACGCTTCGGTGCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCt < 1:115679/171‑1 (MQ=16) tCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCa > 1:219980/1‑148 (MQ=32) tCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTcgtcgt > 2:526163/1‑233 (MQ=33) tCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTAGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTg > 2:766817/1‑234 (MQ=21) aTGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGC‑‑GAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAg > 1:1223483/1‑235 (MQ=9) gtgacgccTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACTGAAGGCGGT‑‑GAGATCACCTaca < 2:732295/120‑1 (MQ=255) tCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTg > 1:899707/1‑178 (MQ=33) tCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCt > 1:547853/1‑236 (MQ=37) acacCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCt > 2:736431/1‑234 (MQ=37) cacCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCAc > 1:754532/1‑117 (MQ=33) cacCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCAc < 2:754529/117‑1 (MQ=33) cacCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACCGGCTCgg > 1:938820/1‑236 (MQ=18) tccTTCGAGAACCTGCAACTGGGCGGCCACGCGTAGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCAACGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGcacc < 1:282066/197‑1 (MQ=16) gttCGAGAACCTGGAGCTGGGCGGCTCCGCTTCGGTTCAAGTCACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATc < 1:1136022/123‑1 (MQ=11) ttCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGcacc < 1:431515/195‑1 (MQ=33) cGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTg < 1:766820/236‑1 (MQ=39) aaCCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTa > 1:1088293/1‑167 (MQ=33) aaCCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACggg > 1:1083319/1‑221 (MQ=35) atcTGGGCGGCAACGCTTCGGTTCAAGTGCCCGACGCCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAACCGCACCa < 1:369737/234‑1 (MQ=255) aCTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAACCGCACCAg > 1:1061980/1‑236 (MQ=40) ggcAACGCGTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAACCGCACCa < 2:651492/228‑1 (MQ=255) gcAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGG‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTc > 2:213121/1‑142 (MQ=21) aCGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAACCGCACCAGACAACGTCTa < 1:65484/235‑1 (MQ=40) gCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGCTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGTTCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAACCGCACCAg < 1:1207438/223‑1 (MQ=255) tcaCCGACACCCGCGACGAGGTGGTGGCCAAGCTGACCGCCACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTgtcg < 2:28113/160‑1 (MQ=255) tGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGTGAGAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCGGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACggg > 2:1212695/1‑189 (MQ=255) gACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCggt < 1:942548/236‑1 (MQ=255) cacCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCCACAGCACCACCGGCTCGGCCACTGCAACCGCAc > 1:1079491/1‑200 (MQ=17) acgaGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAAc > 2:995535/1‑187 (MQ=39) acgaGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAACCGCACCa < 2:1042438/194‑1 (MQ=255) acgaGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGc > 1:287096/1‑235 (MQ=255) gtggCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAAc > 2:1046273/1‑179 (MQ=40) gtggCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAACCGCACCAGACAACGTcc > 1:1164526/1‑195 (MQ=255) tggCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTc > 1:1133988/1‑113 (MQ=35) ggCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATTACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAACCGCACCAGACAACGTCTATGTCTGCACTAATGCGCCGGTGGTCAATGCCATCGACGcc > 1:383812/1‑235 (MQ=255) gCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGt < 1:963568/236‑1 (MQ=255) cGACGCTGACCGCCACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTg < 1:110749/140‑1 (MQ=255) cTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCaa < 2:1097164/143‑1 (MQ=37) tGACCGCGACCCCTTCAGTCACCGAAGGCGGt < 2:232480/32‑1 (MQ=40) gACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCaa > 2:829064/1‑167 (MQ=255) cgACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAGCCGcca > 2:635780/1‑166 (MQ=255) cgACCCATTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCAcc < 1:447346/47‑1 (MQ=255) cAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATGAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAACCGCACCAGACAAc > 1:689691/1‑167 (MQ=255) gTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACg > 2:394938/1‑208 (MQ=255) tCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAACCGCACCAGACAACGTCTa < 2:1233618/169‑1 (MQ=37) aCCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTg < 2:255959/54‑1 (MQ=35) aCCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGtt < 2:547850/233‑1 (MQ=255) aaGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGGGGaa > 1:278064/1‑226 (MQ=255) ggCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAaacct > 1:449476/1‑236 (MQ=255) | GCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCAGTCACCGAAGGCGGT‑‑GAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCCACTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCT > AE015451/200789‑201237 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |