| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AE015451 | 203,674 | T→C | 7.3% | D3060D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451 | 203,674 | 0 | T | C | 7.3% | 293.2 / 6.4 | 91 | D3060D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (48/36); new base C (2/5); total (50/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACC > AE015451/203454‑203908 | cgcAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATcaa > 1:686894/1‑235 (MQ=39) aGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACATCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGTTCACTTACACCATCACGCTGACCAACAAAGATGGTCTGCCGCTCaacaac > 1:645269/1‑236 (MQ=255) tgaggaCGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCGCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAAcc < 1:162937/233‑1 (MQ=255) cGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGc < 1:28866/234‑1 (MQ=38) cGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGACGGCCTGCCGATCCATAACCACAGTGCAt > 1:162839/1‑236 (MQ=255) tACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGAc < 1:739781/236‑1 (MQ=40) aCAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGAc > 1:885102/1‑235 (MQ=40) aCAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGAc > 1:1249343/1‑235 (MQ=40) aaCGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCtt > 1:923409/1‑236 (MQ=39) ccAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGa < 2:885099/233‑1 (MQ=40) aGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCa < 1:68122/235‑1 (MQ=38) tCACCTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGc < 2:896059/199‑1 (MQ=255) tCACCTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGc > 1:896062/1‑199 (MQ=255) tCACCTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGAc > 1:695036/1‑221 (MQ=40) tCACCTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGGCTGCCGATCAACAAcc > 1:358293/1‑192 (MQ=38) tCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCt > 1:823646/1‑173 (MQ=38) tCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTAACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCg > 1:1187719/1‑235 (MQ=37) tCGGCGGTGGACGCCACTGGTGCAACCTTCGAGAACCTGGCGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTg > 2:1154029/1‑210 (MQ=17) cggTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCg > 1:1137429/1‑236 (MQ=37) ggACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCa < 1:254978/236‑1 (MQ=37) cACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCt > 1:874617/1‑188 (MQ=39) tGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGc > 1:1023789/1‑155 (MQ=39) cTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCaa < 1:47700/195‑1 (MQ=38) ttCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCAcc > 2:898847/1‑207 (MQ=38) ttCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCggtctcgt > 1:288075/1‑208 (MQ=255) accGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGACGGTCACCGAAGGCGGCGAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCg < 2:819647/148‑1 (MQ=255) gagaACCTGGCGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGCCCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCAcc < 1:1027056/204‑1 (MQ=21) gagaACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGc < 2:566056/189‑1 (MQ=39) aaCCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGt > 1:1278171/1‑236 (MQ=40) aGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGc > 1:97844/1‑223 (MQ=37) gCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCAATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGccc > 1:907099/1‑236 (MQ=2) gggCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAAcc < 2:301975/143‑1 (MQ=39) ggTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGAc > 1:702533/1‑234 (MQ=40) cgcgAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCaaa > 2:286792/1‑169 (MQ=38) cgcgAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCAATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTc < 1:798009/235‑1 (MQ=16) aaGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACg < 1:723885/235‑1 (MQ=255) gTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTa < 1:1242025/230‑1 (MQ=255) tGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTc < 2:1278168/233‑1 (MQ=255) tccccGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCTCTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATcaa < 1:281064/112‑1 (MQ=255) tCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAAc < 2:1274991/157‑1 (MQ=255) tCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAAc > 1:1274994/1‑157 (MQ=39) ccccGCCACCACCGACGAAGTCGTGGCCACGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGc < 2:288074/149‑1 (MQ=255) cACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCAcc < 2:644295/184‑1 (MQ=39) cACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCAcc > 1:644298/1‑184 (MQ=39) gACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGa > 1:258704/1‑199 (MQ=255) acacCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACg > 2:1283499/1‑144 (MQ=39) cgccGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGc < 2:361352/96‑1 (MQ=255) acgaAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCg < 1:309079/186‑1 (MQ=40) acgaAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCg > 2:309078/1‑186 (MQ=40) acgaAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGc < 2:455996/112‑1 (MQ=12) tCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCAATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAatcgatc < 1:391725/236‑1 (MQ=37) gTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTa < 2:60602/200‑1 (MQ=40) gTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGGGATCAAagcgatcg > 1:146199/1‑235 (MQ=255) gACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATcaaca > 1:630968/1‑83 (MQ=255) gACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAg > 1:205160/1‑236 (MQ=37) gACCGCCACCCCGTCGATCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATcaaca < 2:630965/83‑1 (MQ=255) gcgaCCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATc > 2:1017216/4‑210 (MQ=25) cACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCg < 1:788925/235‑1 (MQ=37) ccGTCGGTCACCGAAGGTGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCggac > 2:288491/1‑124 (MQ=25) aCCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCaa > 2:904557/1‑125 (MQ=35) aGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGc < 1:898850/236‑1 (MQ=38) ggcgAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGt > 1:621151/1‑168 (MQ=38) gcgAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTg < 1:1121313/236‑1 (MQ=37) cgAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGAACCAACGACCCTGCGACCAACTCGATCGCAACCGTTGAAGGt > 1:295359/1‑208 (MQ=255) cgAGAGCACTTACACAATCACCCTGACCAACAAAGATGGTCTGCCTATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGTCAAAACCGTCATCACCGTGCCGGACAACGGCACCGTGGGCa < 1:80906/128‑1 (MQ=11) cacCATCACGCTGACCAACAAAGACGGTCTGCCAATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAg < 1:1040084/235‑1 (MQ=14) cacCATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAg < 1:522224/235‑1 (MQ=14) acCATCACGCTGACCAACAAAGACGGTCTGCCAATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAg < 2:1117331/234‑1 (MQ=14) cATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACg < 1:1275008/235‑1 (MQ=37) attaCCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACg < 1:880615/231‑1 (MQ=18) cccTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGtcatca > 2:582590/1‑81 (MQ=35) cccTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGcccc > 1:861862/1‑127 (MQ=38) cccTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGcccc < 2:861859/127‑1 (MQ=39) cccTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCACCGACCCTGTGATCAAatcgatcg > 2:228746/1‑174 (MQ=25) cccTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGtt > 1:240678/1‑182 (MQ=35) cccTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTACGtt > 2:278919/1‑205 (MQ=25) cccTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTc > 1:708896/1‑236 (MQ=37) cccTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGGACCAACGACCCtgt > 2:509980/1‑160 (MQ=37) ccTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCACCGCCCCt > 2:201537/1‑157 (MQ=25) ccTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGCACAACGTCTACGTCGGTACCAACGACCCtgc > 2:10059/1‑158 (MQ=25) ccTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCAAGATGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCa < 1:685254/236‑1 (MQ=37) cTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGCTCGCAACCGCTGACGGGCCGGAc > 2:330088/1‑192 (MQ=255) tGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGc < 1:228746/236‑1 (MQ=35) aacaaAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCg > 1:1140190/1‑120 (MQ=39) aacaaAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCg < 2:1140187/120‑1 (MQ=39) caaAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGc < 1:1122941/114‑1 (MQ=40) caaAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGc > 2:1122938/1‑114 (MQ=40) aaGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAg > 2:477265/1‑215 (MQ=37) aGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCg > 1:1139389/1‑194 (MQ=37) gATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCAc > 1:1087510/1‑236 (MQ=34) aTGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCAcc < 1:592482/236‑1 (MQ=33) | CGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACC > AE015451/203454‑203908 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |