| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AE015451 | 213,601 | G→A | 5.6% | V6369V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451 | 213,601 | 0 | G | A | 5.6% | 288.3 / 4.4 | 90 | V6369V (GTG→GTA) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base G (40/44); new base A (3/2); total (43/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.70e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAACAATGCCCAGGTCATCATCAAGGCTGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGTACCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGAAGGTGCGGACG > AE015451/213370‑213827 | caacaaTGCCCAGGTCATCATCAAGGCTGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCg > 1:1262818/1‑236 (MQ=255) acaaTGCCCAGGTCATCATCAAGGCTGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCg < 1:1032517/234‑1 (MQ=255) caaTGCCCAGGTCATCATCAAGGCTGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAg < 1:516573/236‑1 (MQ=255) caaTGCCCAGGTCATCATCAAGGCTGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAg < 1:1271549/236‑1 (MQ=255) ccAGGTCATCATCAAGGCTGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAggcggc < 1:404394/235‑1 (MQ=255) ccAGGTCATCATCAAGGCTGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAgg < 2:850790/231‑1 (MQ=255) ccAGGTCATCATCAAGGCTGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGgcggcg < 1:673337/236‑1 (MQ=255) atcaAGGCTGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGCTGACCGCGACCCCGTCGGTAACCGAAGGCGGCGAGATCACCt > 1:552913/1‑235 (MQ=255) cGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGc < 1:600674/236‑1 (MQ=255) aGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACca > 1:628327/1‑235 (MQ=255) cATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGAc < 1:774724/236‑1 (MQ=255) ccACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGc < 1:1066153/236‑1 (MQ=255) ccACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGc < 1:503085/236‑1 (MQ=255) ccACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGc < 1:77571/236‑1 (MQ=255) cACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTAc < 2:899948/200‑1 (MQ=255) cACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTAc > 1:899951/1‑200 (MQ=255) cTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATc < 1:297789/236‑1 (MQ=255) cTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATc < 2:552910/206‑1 (MQ=255) aaGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCaacaac < 1:1216818/236‑1 (MQ=255) tGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGt < 1:1115780/235‑1 (MQ=255) gaCAACGACGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGTTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGc < 1:70915/210‑1 (MQ=255) cAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGATGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGcctgtctct > 1:297072/1‑228 (MQ=11) aaCGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGAc > 2:1233021/1‑233 (MQ=255) aaCGACGCTGGCCAGATCAGCCTGGGCATTAACTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGc < 1:185725/208‑1 (MQ=255) aaCGACGCTGGCCAGATCAGCCTGGGCATCAACTCGGCCGTGGCCGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTGCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTAc < 2:280836/173‑1 (MQ=11) aCGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTc < 1:1153834/236‑1 (MQ=255) cTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGaa > 1:659830/1‑152 (MQ=255) cTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTg > 1:198709/1‑236 (MQ=255) tGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTCCATTGACCTTCACCCTGa > 1:624474/1‑236 (MQ=14) tGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCgag < 2:1136193/160‑1 (MQ=255) tGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCgag > 1:1136196/1‑160 (MQ=255) tGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTg > 1:541057/1‑235 (MQ=255) gCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAg > 1:1220081/1‑235 (MQ=255) cAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGc < 1:1233024/235‑1 (MQ=255) aGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCaa > 1:785831/1‑236 (MQ=255) cTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAAc < 1:1242991/236‑1 (MQ=255) gggCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAAcc > 1:623589/1‑235 (MQ=255) aTTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGtca < 1:998154/235‑1 (MQ=255) ttCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAg > 1:151576/1‑167 (MQ=255) ttCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTg < 2:242855/175‑1 (MQ=255) ttCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGACCGACCGCAAAACCGtcat > 1:326488/1‑231 (MQ=255) tCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTg > 2:287855/1‑193 (MQ=255) cAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACcaaca > 2:696605/1‑159 (MQ=255) tGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCgg > 2:1097498/1‑234 (MQ=255) tGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGAc > 2:1737/1‑151 (MQ=9) ggACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGgcggcg < 2:1262815/125‑1 (MQ=40) ggTGCGACCTTCGAGAACCTGGAGCTGGGCGGCGACGCGTCGGTTCATGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATc < 2:21439/132‑1 (MQ=14) agTGCGACCATCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAGGACGGcc < 2:826759/153‑1 (MQ=255) tccGACCTTCGAGAACCTGCAACGGGGCGGCAACGCTTCGGTCCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGc < 2:265610/153‑1 (MQ=255) tGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGtc > 1:542567/1‑234 (MQ=39) tGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTgg < 1:434023/236‑1 (MQ=40) tGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTCCCGATCAACACCcac > 2:66192/1‑169 (MQ=255) cgtCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACGCCACCGACGACGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACCCCATCACGCTGACCAACAAAGACGGCCTGCCGATc < 2:297071/152‑1 (MQ=255) ttCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAggcgg > 1:411337/1‑104 (MQ=40) ttCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATTACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGAGCATTGACCTTCAct > 1:317549/1‑179 (MQ=255) ttCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGc > 1:735223/1‑236 (MQ=40) ttCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGc > 1:149233/1‑236 (MQ=38) ttCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGGACTGc > 1:288803/1‑236 (MQ=38) ttCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATc < 2:711795/123‑1 (MQ=255) cGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACg < 2:1129425/188‑1 (MQ=255) cGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACg > 1:1129428/1‑188 (MQ=255) cAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTg < 1:1045080/235‑1 (MQ=255) aCTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTAACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCTATCGACAAcc > 1:541495/1‑146 (MQ=255) cTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTATACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATGGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCTAATGGCACCGTGGGTACTGCCACCGTGACTGcc > 2:624364/1‑233 (MQ=255) cTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGCGCCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCaacaac > 1:270030/1‑144 (MQ=255) gcAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACGAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGGTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACaa > 1:675933/1‑235 (MQ=255) cAACTCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAAcc < 1:81475/137‑1 (MQ=255) cAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTg > 2:925893/1‑143 (MQ=255) ggctaccgTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGt > 2:954263/8‑234 (MQ=255) cTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCt < 2:628324/234‑1 (MQ=255) ttCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACg < 1:632437/236‑1 (MQ=255) gacgaAGTAGTGGCCAAGTTGCCCGCGACCCCGCCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAAc < 2:207873/165‑1 (MQ=16) aaGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTcc < 2:1269984/193‑1 (MQ=255) aaGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTcc > 1:1269987/1‑193 (MQ=255) gtagtGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGTACCAACGACCCTGTCGTGATGt > 1:830947/1‑232 (MQ=40) tagtGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGTACCAACGACCCTGTCGTGATGTCGATc < 1:437952/236‑1 (MQ=39) tagtGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGTACCAACGACCCTGTCGTGATGTCGATc < 1:287856/236‑1 (MQ=39) tagtGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGTACCAACGACCCTGTCGTGATGTCGATc < 1:245939/236‑1 (MQ=39) gtGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACt > 2:695455/1‑171 (MQ=35) tGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTa > 1:207873/1‑168 (MQ=35) tGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGTACCAACGACCCTGTCGTGATGTCGATc < 2:750439/233‑1 (MQ=40) cAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGCCATCACCGTGCCGGCCACCGGCAc > 1:535302/1‑156 (MQ=18) aaGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGTACCAACGACCCTGTCGTGATGTCGATCGCTACCGt > 1:940176/1‑236 (MQ=255) gACCGCGCCCCCGTCGGTGACCGACGGCCGCGAGATTACCTACCCCATCACGCTGACCACCAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGc < 2:212300/162‑1 (MQ=255) gACCGCGACCCCGCCGGTGACCGAAGGCGGCGAGATTACCTACACCATCCCGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAAc < 2:248070/145‑1 (MQ=21) cccGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGTACCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGAAGGTGCGGACg > 1:568442/1‑236 (MQ=40) ccttCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCTATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCATCATCACCGTACCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGt > 1:418699/4‑186 (MQ=255) cGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACCTCTACGGCGGTACCAACGACCCTGTCGTGa > 1:1053784/1‑201 (MQ=255) cGGTGACCGAAGGATGCGTGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATc < 1:570525/65‑1 (MQ=11) ggTCACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCgg < 1:689586/164‑1 (MQ=18) | CAACAATGCCCAGGTCATCATCAAGGCTGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGTACCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGAAGGTGCGGACG > AE015451/213370‑213827 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |