New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	140943 =	50 (1.140)	5 (0.120)	5/324	NT	9.7%	coding (904/1347 nt)	algB	Alginate biosynthesis transcriptional regulatory protein AlgB
	?	AE015451	140962 =	46 (1.110)					coding (885/1347 nt)	algB	Alginate biosynthesis transcriptional regulatory protein AlgB

CGCCTTCACCGGCGCCAGCGAAAGCACCCTCGGGCGGGTCAGCCAGGCTGACGGGGGCACGCTATTCCTCGACGAGATCGGCGATTTCCCGCTGACCTTGCAGCCCAAACTGTTGCGTTTCATCCAGGACAAGGAATACGAACGCGTCGGCGACCCGGTTACCCGGCGTGCCGATGTACGTATCCTGGCTGCCACCAACCTCAACCTTGAAGAGATGGTGCGCGAAAGCCGCTTTCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/141181‑140943 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctttcgcgCACCATCTCTTCAAGGTTGAGGTTGGTGGCAGCCAGGATACGTACATCGGCACGCCGGGTAACCGGGTCGCCGACGCGTTCGTATTCCTTGTCCTGGATGAAACGCAACAGTTTGGGCTGCAA  >  AE015451/140962‑141084                                                                                                                                                                                                                                                                                                                                                                            CGCCTTCACCGGCGCCAGCGAAAGCACCCTCGGGCGGGTCAGCCAGGCTGACGGGGGCACGCTATTCCTCGACGAGATCGGCGATTTCCCGCTGACCTTGCAGCCCAAACTGTTGCGTTTCATCCAGGACAAGGAATACGAACGCGTCGGCGACCCGGTTACCCGGCGTGCCGATGTACGTATCCTGGCTGCCACCAACCTCAACCTTGAAGAGATGGTGCGCGAAAGCCGCTTT                                                                                                                                 >  1:779580/1‑235  GCCTTCACCGGCGCCAGCGAAAGCACCCTCGGGCGGGTCAGCCAGGCTGACGGGGGCACGCTATTCCTCGACGAGATCGGCGATTTCCCGCTGACCTTGCAGCCCAAACTGTTGCGTTTCATCCAGGACAAGGAATACGAACGCGTCGGCGACCCGGTTACCCGGCGTGCCGATGTACGTATCCTGGCTGCCACCAACCTCAACCTTGAAGAGATGGTGCGCGAAAGCCGCTTT                                                                                                                                 >  2:649900/1‑234                                                                     TCGACGAGAGCGGCGATTTCCCGCTGACCTTGCAGCCCAAACTGTTGCGTTTCATCCAGGACAAGGAATACGAACGCGTCGGCGACCCGGTTACCCGGCGTGCCGATGTACGTATCCTGGCTGCCACCAACCTCAACCTTGAAGAGATGGTGCGCGAAAGCCGCTTTCGCGCACCATCTCTTCAAGGTTGAGGTTGGTGGCAG                                                                                             <  2:672646/203‑1                                                                                                                                             AACGCGTCGGCGACCCGGTTACCCGGCGTGCCGATGTACGTATCCTGGCTGCCACCAACCTCAACCTTGAAGAGATGGTGCGCGAAAGCCGCTTTCGCGCACCATCTCTTCAAGGTTGAGGTTGGTGGC                                                                                               <  1:411493/129‑1                                                                                                                                             AACGCGTCGGCGACCCGGTTACCCGGCGTGCCGATGTACGTATCCTGGCTGCCACCAACCTCAACCTTGAAGAGATGGTGCGCGAAAGCCGCTTTCGCGCACCATCTCTTCAAGGTTGAGGTTGGTGGC                                                                                               >  2:411491/1‑129                                                                                                                                                                                   ctTATCCTGGCTGCCACCAACCTCAACCTTGAAGAGATGGTGCGCGAAAGCCGCTTTCGCGCACCATCTCTTCAAGGTTGAGGTTGGTGGCAGCCAGGATACGTACATCGGCACGCCGGGTAACCGGGTCGCCGACGCGTTCGTATTCCTTGTCCTGGATGAAAC                     <  2:743022/163‑1                                                                                                                                                                                                                               CGACAGCCGCTTTCGCGCACCATCTCTTCAAGGTTGAGGTTGGTGGCAGCCAGGATACGTACAT                                                                              <  2:597936/64‑1                                                                                                                                                                                                                                               GCACCATCTCTCCAAGGTTGAGGTTGGTGGCAGCCAGGATACGTACATCGGCACGCCGGGTAACCGGGTCGCCGACGCGTTCGTATTCCTTGTCCTGGATGAAACGCAACAGTTTGGGCTGCAA  <  1:696295/124‑1                                                                                                                                                                                                                                                                                                                                                                            CGCCTTCACCGGCGCCAGCGAAAGCACCCTCGGGCGGGTCAGCCAGGCTGACGGGGGCACGCTATTCCTCGACGAGATCGGCGATTTCCCGCTGACCTTGCAGCCCAAACTGTTGCGTTTCATCCAGGACAAGGAATACGAACGCGTCGGCGACCCGGTTACCCGGCGTGCCGATGTACGTATCCTGGCTGCCACCAACCTCAACCTTGAAGAGATGGTGCGCGAAAGCCGCTTTCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/141181‑140943 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctttcgcgCACCATCTCTTCAAGGTTGAGGTTGGTGGCAGCCAGGATACGTACATCGGCACGCCGGGTAACCGGGTCGCCGACGCGTTCGTATTCCTTGTCCTGGATGAAACGCAACAGTTTGGGCTGCAA  >  AE015451/140962‑141084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.