New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 429421	35 (0.800)	3 (0.070)	3/332	NT	8.1%	coding (101/519 nt)	PP_0352	RNA polymerase sigma‑70 factor, ECF subfamily
	?	AE015451	= 429442	34 (0.800)					coding (80/519 nt)	PP_0352	RNA polymerase sigma‑70 factor, ECF subfamily

GCTTTGAGGTCTTCAAGGATCAGGTGCTGCATTTCTGGCGAGGGCTGTTCGGCTTCAGGGATCAGTGCCAGCTCGGCCAGGTAGGCCTGTTCCAGCGCGGCGCGGCGGAAGTGGTCGAACATCAGCCCCTTGGCCACGGCGGCCAGAAACGCGCGGGGTTCGCGGGGGGTGTCCAGTTGCTCACGACCAAGCAGGCGCACGAAGGTGTCCTGGCTCAGGTCTTCAGCACGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/429187‑429421 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcTGCAACGCAGCATGGCCTGCCGCCAGCGTGCTGAAGACCTGAGCCAGGACACCTTCGTGCGCCTGCTTGGTCGTGAGCAACTGGACACCCCCCGCGAACCCCGCGCGTTTCTGGCCGCCGTGGCCAAGGGGCTGATGTTCGACCACTTCCGCCGCGCCGCGCTGGAACAGGCCTACCTGGCC  <  AE015451/429442‑429261                                                                                                                                                                                                                                                                                                                                                                                                                                   GCTTTGAGGTCTTCAAGGATCAGGTGCTGCATTTCTGGCGAGGGCTGTTCGGCTTCAGGGATCAGTGCCAGCTCGGCCAGGTAGGCCTGTTCCAGCGCGGCGCGGCGGAAGTGGTCGAACATCAGCCCCTTGGCCACGGCGGCCAGAAACGCGCGGGGTTCGCGGGGGGTGTCCAGTTGCTCACGACCAAGCAGGCGCACGAAGGTGTCCTGGCTCAGGTCTTCAGCACGCTGGC                                                                                                                                                                                        <  1:270853/235‑1                                                                              CAGGTAGGCCTGTTCCAGCGCGGCGCGGCGGAAGTGGTCGAACATCAGCCCCTTGGCCACGGCGGCCAGAAACGCGCGGGGTTCGCGGGGGGTGTCCAGTTGCTCACGACCAAGCAGGCGCACGAAGGTGTCCTGGCTCAGGTCTTCAGCACGCTG                                                                                                                                                                                          >  2:273029/1‑156                                                                                                                                                           GGGGTTCGCGGGGGGTGTCCAGTTGCTCACGACCAAGCAGGCGCACGAAGGTGTCCTGGCTCAGGTCTTCAGCACGCTGGCTGCAACGCAGCATGGCCTGCCGCCAGCGTGCTGAAGACCTGAGCCAGGACACCTTCGTGCGCCTGCTTGGTCGTGAGCAACTGGAGACCCCCCGCGAACCCCGCGCGTTTCTGGCCGCCGTGGCCAAGGGG                                                     >  1:549323/1‑212                                                                                                                                                                           GTCCAGTTGCTCACGACCAAGCAGGCGCACGAAGGTGGCCTGGCTCAGGTCTTCAGCACGCTGGCTGCAACGCAGCATGGCCTGCCGCCAGCGTGCTGc                                                                                                                                                      >  2:261855/1‑98                                                                                                                                                                                       ACGACCAAGCAGGCGCACGAAGGTGTCCTGGCTCAGGTCTTCAGCACGCTGGCTGCAACGCAGCATGGCCTGCCGCCAGCGTGCTGAAGACCTGAGCCAGGACACCTTCGTGCGCCTGCTTGGTCGTGAGCAACTGGACACCCCCCGCGAACCCCGCGCGTTTCTGGCCGCCGTGGCCAAGGGGCTGATGTTCGGCCACTTCCGCCGCGCCGCGCTGGCACAGGCCTACCTGGCC  >  1:41578/1‑235                                                                                                                                                                                         GACCAAGCAGGCGCACGAAGGTGTCCTGGCTCAGGTCTTCAGCACGCTGGC                                                                                                                                                                                        <  2:195171/51‑1                                                                                                                                                                                                                                                                                                                                                                                                                                   GCTTTGAGGTCTTCAAGGATCAGGTGCTGCATTTCTGGCGAGGGCTGTTCGGCTTCAGGGATCAGTGCCAGCTCGGCCAGGTAGGCCTGTTCCAGCGCGGCGCGGCGGAAGTGGTCGAACATCAGCCCCTTGGCCACGGCGGCCAGAAACGCGCGGGGTTCGCGGGGGGTGTCCAGTTGCTCACGACCAAGCAGGCGCACGAAGGTGTCCTGGCTCAGGTCTTCAGCACGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/429187‑429421 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcTGCAACGCAGCATGGCCTGCCGCCAGCGTGCTGAAGACCTGAGCCAGGACACCTTCGTGCGCCTGCTTGGTCGTGAGCAACTGGACACCCCCCGCGAACCCCGCGCGTTTCTGGCCGCCGTGGCCAAGGGGCTGATGTTCGACCACTTCCGCCGCGCCGCGCTGGAACAGGCCTACCTGGCC  <  AE015451/429442‑429261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.