New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 519278	40 (0.920)	3 (0.070)	3/322	NT	7.4%	coding (667/1035 nt)	argC	N‑acetyl‑gamma‑glutamyl‑phosphate reductase 1
	?	AE015451	= 519564	37 (0.900)					coding (953/1035 nt)	argC	N‑acetyl‑gamma‑glutamyl‑phosphate reductase 1

CCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATCGCCACTTGCCGGAGATCAGCCAGGGCCTGCGCCTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/519040‑519278 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctggccgGAGGCACCCTTGACCAGGTTGTCGATCACCGAAAGCACCACCACCAGATCACCACCCTGCGGACGATGAACGGCAATGCGGCAGACGTTGGCACCACGCACGCTACGGGTTTCCGGATGGCTGCCTGCTGGCATCACGTCGACGAACGGTTCATCGGCGTAGCGTTTCTCGAACAGCGCCTGCAGGTCGACCGAGGTATCGACCACGTTCGCGTACAGGGTGGCATGGATG  <  AE015451/519564‑519334                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGTGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATCGCCACTTGCCGGAGATCAGCCAGGGCCTGCGCCTGG                                                                                                                                                                                                                                            <  1:434810/236‑1                                    CCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATCGCCACTTGCCGGAGATCAGCCAGGGCCTGC                                                                                                                                                                                                                                                  <  1:177101/195‑1                                                          GCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATCGCCACTTGCCGGAGATCAGCCAGGGCCTGC                                                                                                                                                                                                                                                  >  2:596833/1‑173                                                                                  GTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATCGCCACTTGCCGGAGATCAGCCAGGGCCTGCGCCTGGCCGGAGGCACCCTTGACCAGGTTGT                                                                                                                                                                                                                   >  2:488/1‑180                                                                                                     TGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATCGCCACTTGCCGGAGATCAGCCAGGGCCTGCGCCTGGCCGGAGGCACCCTTGACCAGGTTGTCGATCACCGAAAGCACCACCACCAGATCACCACCCTGCGGACGATGAACGGCAATGCGGCAGACGTTGGCACCAC                                                                                                                                        <  1:488/236‑1                                                                                                                                   GGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATCGCCACTTGCCGGAGATCAGCCAGAGCCTGCGCCTGGCCGGAGGCACCATTGACCAGGTTGTCGATCACCGAAAGCACCACCACCAGAT                                                                                                                                                                                        <  2:703006/158‑1                                                                                                                                                                                                                                           GGCCGGAGGCACCCTTGACCAGGTTGTCGATCACCGAAAGCACCACCACCAGATCACCACCCTGCGGACGATGAACGGCAATGCGGCAGACGTTGGCACCACGCACGCTACGGGTTTCCGGATGGCTGCCTGCTGGCATCACGTCGACGAACGGTTCATCGGCGTAGCGTTTCTCGAACAGCGCCTGCAGGTCGACCGAGGTATCGACCACGTTCGCGTACAGGGTGGCATGGATG  >  1:135756/1‑236                                                                                                                                                                                                                                           GGCCGGAGGCACCCTTGACCAGGTTGTCGATCACCGAAAGCACCACCACCAGATCACCACCCTGCGGACGATGAACGGCAATGCGGCAGACGTTGGCACCACGCACGCTACGGGTTTCCGGATGGCTGCCTGCTGGCATCACGTCGACGAACGGTTCATCGGCGTAGCGTTTCTCGAACAGCGCCTGCAGGTCGACCGAGGTATCGACCACGTTCGCGTACAGGGTGGCATGGATG  >  1:239646/1‑236                                                                                                                                                                                                                                           GGCCGGAGGCACCCTTGACCAGGTTGTCGATCACCGAAAGCACCACCACCAGATCACCACCCTGCGGACGATGAACGGCAATGCGGCAGACGTTGGCACCACGCACGCTACGGGTTTCCGGATGGCTGCCTGCTGGCATCACGTCGACGAACGGTTCATCGGCG                                                                          >  2:444998/1‑164                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATCGCCACTTGCCGGAGATCAGCCAGGGCCTGCGCCTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/519040‑519278 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctggccgGAGGCACCCTTGACCAGGTTGTCGATCACCGAAAGCACCACCACCAGATCACCACCCTGCGGACGATGAACGGCAATGCGGCAGACGTTGGCACCACGCACGCTACGGGTTTCCGGATGGCTGCCTGCTGGCATCACGTCGACGAACGGTTCATCGGCGTAGCGTTTCTCGAACAGCGCCTGCAGGTCGACCGAGGTATCGACCACGTTCGCGTACAGGGTGGCATGGATG  <  AE015451/519564‑519334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.