New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	990689 =	44 (1.010)	5 (0.120)	4/326	NT	11.1%	coding (570/1143 nt)	PP_0856	conserved lipoprotein of unknown function
	?	AE015451	990706 =	38 (0.910)					coding (587/1143 nt)	PP_0856	conserved lipoprotein of unknown function

CACCAGACAGCAACAAGCCGCCGTCGATATCAACCACACGGTCCAGCTCGGAACGGCCCTTCGGGATGGCCACGCGGCTCTCCCACACCGGCACACCGTTGTTGATGTCCACCGCCACTACCTTGCCGGTAGACAGGCCGGCAACCGCCAGGCGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/990846‑990689 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggttgCCGGCCTGTCTACCGGCAAGGTAGTGGCGGTGGACATCAACAACGGTGTGCCGGTGTGGGAGAGCCGCGTGGCCATCCCGAAGGGCCGTTCCGAGCTGGACCGTGTGGTTGATATCGACGGCGGCTTGTTGCTGTCTGGTGGT  >  AE015451/990706‑990848                                                                                                                                                                                                                                                                                                               CACCAGACAGCAACAAGCCGCCGTCGATATCAACCACACGGTCCAGCTCGGAACGGCCCTTCGGGATGGCCACGCGGCTCTCCCACACCGGCACACCGTTGTTGATGTCCACCGCCACTACCTTGCCGGTAGACAGGCCGGCAACCGCCAGGCGGTTGCCGGCCTGTCTACCGGCAAGGTAGTG                                                                                                                       >  2:298799/1‑184                                     CACGGTCCAGCTCGGAACGGCCCTTCGGGATGGCCACGCGGCCCTCCCACACCGGCACACCGTTGTTGATGTCCACCGCCACTACCTTGCCGGTAGACAGGCCCGCAACCGCCCGGCG                                                                                                                                                     >  2:147468/1‑118                                               CTCGGAACGGCCCTTCGGGATGGCCACGCGGCTCTCCCACACCGGCACACCGTTGTTGATGTCCACCGCCACTACCTTGCCGGTAGACAGGCCGGCAACCGCCAGGCGGTTGCGGGCCTGTCTACCGGCAAGGTAGTGGCGGTG                                                                                                                 <  1:298801/144‑1                                                   GAACGGCCCTTCGGGATGGCCACGCGGCTCTCCCACACCGGCACACCGTTGTTGATGTCCACCGCCACTACCTTGCCGGTAGACAGGCCGGCAACCGCCAGGCGGTTGGTGGCCTGTCTACCGGCAAGGTAGTGG                                                                                                                      <  2:58359/135‑1                                                                               gCTCCCACACCGGCACACCGTTGTTGATGTCCACCGCCACTACCTTGCCGGTAGACAGGCCGGCAACCGCCAGGCGGTTGCCGGCCTGTCTACCGGCAAGGTAGTGGCGGTGGACATCAACAACGGTG                                                                                                 <  2:447664/127‑1                                                                                                               cCCGCCACTCCCTTGCCGGTAGACAGGCCGGCAACCGCCAGGCGGTTGCCGGCCTG                                                                                                                                         <  1:241289/55‑1                                                                                                                CCGCCACTACCTTGCCGGTAGACAGGCCGGCAACCGCCAGGCGGTTGCCG                                                                                                                                              <  1:102682/50‑1                                                                                                                                                      gGGCGGTGGCCGGCCTGTCTACCGGCAAGGTAGTGGCGGTGGACATCAACAACGGTGTGCCGGTGTGGGAGAGCCGCGTGGCCATCCCGAAGGGCCGTTCCGAGCTGGACCGTGTGGTTGATATCGACGGCGGCTTGTTGCTGTCTGGTGGT  <  2:241776/151‑1                                                                                                                                                          ccTTGCCGGCCTGTCTACCGGCAAGGTAGTGGCGGGGGACAT                                                                                                            >  2:125112/3‑42                                                                                                                                                                                                                                                                                                               CACCAGACAGCAACAAGCCGCCGTCGATATCAACCACACGGTCCAGCTCGGAACGGCCCTTCGGGATGGCCACGCGGCTCTCCCACACCGGCACACCGTTGTTGATGTCCACCGCCACTACCTTGCCGGTAGACAGGCCGGCAACCGCCAGGCGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/990846‑990689 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggttgCCGGCCTGTCTACCGGCAAGGTAGTGGCGGTGGACATCAACAACGGTGTGCCGGTGTGGGAGAGCCGCGTGGCCATCCCGAAGGGCCGTTCCGAGCTGGACCGTGTGGTTGATATCGACGGCGGCTTGTTGCTGTCTGGTGGT  >  AE015451/990706‑990848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.