New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1220817	34 (0.780)	3 (0.070)	3/324	NT	7.5%	coding (489/1329 nt)	dctD‑II	C4‑dicarboxylate transport transcriptional regulatory protein
	?	AE015451	= 1221163	42 (1.020)					coding (143/1329 nt)	dctD‑II	C4‑dicarboxylate transport transcriptional regulatory protein

AGCGTGCCGCCGTTGGCATGTTCGATCTTGCCGATGCGGCGTTTGCCGGCACCGGTGAAGGCGTTGGCCTCGTGGCCGAATATCTCGCTTTCAAACAGGTTTTCCGGCAGGCCGCCACAGTTCAGCGCCACGAACGGGTGGCTCTGGCGACGGCTGAAGTCGTGCAGGCAGCGTGCGACCAGCTCTTTGCCGGTGCCGGTCTCGCCTTCGATAAGCACGTTGGCTGAGGTGTCGGCGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1220578‑1220817 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcgacgATTTTGCCGGCATTGTCGTCAGCGATATCCGCCTGCCGGGTATTGATGGCCTGGAGCTGCTCAATCGCCTCAAGGCCCGTGACCGCAGCCTGCCGGTGGTGCTGATCACTGGCCATGGCGATATCGACATGGCCGTTGGCGCCATGCGTAACGGCGCCTACGA  <  AE015451/1221163‑1221001                                                                                                                                                                                                                                                                                                                                                                                                                     AGCGTGCCGCCGTTGGCATGTTCGATCTTGCCGATGCGGCGTTTGCCGGCACCGGTGAAGGCGTTGGCCTCGTGGCCGAATATCTCGCTTTCAAACAGGTTTTCCGGCAGGCCGCCACAGTTCAGCGCCACGAACGGGTGGCTCTGGCGACGGCTGAAGTCGTGCAGGCAGCGTGCGACCAGCTCTTTGCCGGTGCCGGTCTCGCCTTCGATAAGCACGTTGGCTGAGGTGTCG                                                                                                                                                                           >  2:648218/1‑234                            TTGCCGATGCGGCGTTTGCCGGCACCGGTGAAGGCGTTGGCCTCGTGGCCGAATATCTCGCTTTCAAACAGGTTTTCCGGCAGGCCGCCACAGTTCAGCGCCACGAACGGGTGGCTCTGGCGACGGCTGAAGTCGTGCAGGCAGCGTGCGACCAGCTCTTTGCCGGTGCCGGTCTCGCCTTCGATAAGCACGTTGGCTGAGGTGTCGGCGACGATTTTGCCGGCATTGTCGTC                                                                                                                                                 >  2:729753/1‑233                                                     CGGTGAAGGCGTTGGCCTCGTGGCCGAATATCTCGCTTTCAAACAGGTTTTCCGGCAGGCCGCCACAGTTCAGCGCCACGAACGGGTGGCTCTGGCGACGGCTGAAGTCGTGCAGGCAGCGTGCGACCAGCTCTTTGCCGGTGCCGGTCTCGCCTTCGATAAGCACGTTGGCTGAGGTGTCGGCGACGATTTTGCCGGCATTGTCGTCAGCGATATCCGCCTGCCGGGTATTGATG                                                                                                                     <  1:729755/236‑1                                                                    CCTCGTGGCCGAATATCTCGCTTTCAAACAGGTTTTCCGGCAGGCCGCCACAGTTCAGCGCCACGAACGGGTGGCTCTGGCGACGGCTGAAGTCGTGCAGGCAGCGTGCGACCAGCTCTTTGCCGGTGCCGGTCTCGCCTTCGATAAGCACGTTGGCTGAGGTGTCGGCG                                                                                                                                                                        >  2:107426/1‑170                                                                                                     TTTCCGGCAGGCCGCCACAGTTCAGCGCCACGAACGGGTGGCTCTGGCGACGGCTGAAGTCGTGCAGGCAGCGTGCGACCAGCTCTTTGCCGGTGCCGGTCTCGCCTTCGATAAGCACGTTGGCTGAGGTGTCGGCGACGATTTTGCCGGCAGTGTCGTCAGCGATATCCGCCTGCCGGGTATTGATGGCCTGGAGCTGCTCAATCGCC                                                                                                <  1:315364/209‑1                                                                                                                                                                                                                                               CGATTTTGCCGGCATTGTCGTCAGCGATATCCGCCTGCCGGGTATTGATGGCCTGGAGCTGCTCAATCGCCTCAAGGCCCGTGACCGCAGCCTGCCGGTGGTGCTGATCACTGGCCATGGCGATATCGACATGGCCGTTGGCGCCATGCGTAACGGCGCCTACGA  <  2:411591/165‑1                                                                                                                                                                                                                                                                                                                                                                                                                     AGCGTGCCGCCGTTGGCATGTTCGATCTTGCCGATGCGGCGTTTGCCGGCACCGGTGAAGGCGTTGGCCTCGTGGCCGAATATCTCGCTTTCAAACAGGTTTTCCGGCAGGCCGCCACAGTTCAGCGCCACGAACGGGTGGCTCTGGCGACGGCTGAAGTCGTGCAGGCAGCGTGCGACCAGCTCTTTGCCGGTGCCGGTCTCGCCTTCGATAAGCACGTTGGCTGAGGTGTCGGCGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1220578‑1220817 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcgacgATTTTGCCGGCATTGTCGTCAGCGATATCCGCCTGCCGGGTATTGATGGCCTGGAGCTGCTCAATCGCCTCAAGGCCCGTGACCGCAGCCTGCCGGTGGTGCTGATCACTGGCCATGGCGATATCGACATGGCCGTTGGCGCCATGCGTAACGGCGCCTACGA  <  AE015451/1221163‑1221001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.