New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1395221	46 (1.050)	6 (0.150)	5/310	NT	14.0%	coding (958/1047 nt)	ruvB	Holliday junction ATP‑dependent DNA helicase RuvB
	?	AE015451	= 1395205	32 (0.810)					coding (942/1047 nt)	ruvB	Holliday junction ATP‑dependent DNA helicase RuvB

CCTGGCTGCAGCCATCAGCGAAGAGCGTCATACCATCGAAGATGTGCTTGAGCCGTACCTGATTCAGCAGGGCTACATCATGCGCACGCCACGCGGCCGCGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1395118‑1395221 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccacgcggccgcgtggCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCACGCCCACCGGGCCGCCATCGAACTTCTCGATCATGGTCAGCAGCAGGCGACGGTCGGAATGGTCGAAACCACGCTCGTCGACATCCAGCAG  <  AE015451/1395205‑1395020                                                                                                                                                                                                                                                                                                    CCTGGCTGCAGCCATCAGCGAAGAGCGTCATACCATCTAAGATGTGCTTGAGCCGTACCTGATTCAGCAGGGCTACATCATGCGCACGCCACGCGGCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACAT                                                                                                                                             <  1:6463/151‑1            CCATCAGCGCAGAGCGTCATACCATCGAAGATGTGCTTGAGCCGTACCTGATTCAGCAGGGCTACATCATGCGCACGCCACGCGGCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAG                                                                                                                                                              <  2:153510/123‑1                                                        TACCTGATTCAGCAGGACTACATCATGCGCACGCCACGCGGCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCACGCCCACCGGGCCGCCATCGAACTTCTCGA                                                               >  2:505445/1‑174                                                                     AGGGCTACATCATGCGCACGCCACGCGGCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCACGCCCACCGGGCCGCCATCGAACTTCTCGCTCATGGTCAGCAGCAGGCGACGGTCGGAATGGTCGAAACCACGCTCGTCGACCTCCAGCAG  >  1:50854/1‑222                                                                     AGGGCTACATCATGCGCACGCCACGCGGCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCACGCCCACCGGGCCGCCATCGAACTTCTCGATCATGGTCAGCAGCAGGCGACGGTCGGAATGGTCGCAACCA                      >  1:624831/1‑202                                                                          TACATCATGCGCACGCCACGCGGCCGCGTGGCGTGCG                                                                                                                                                                                      >  2:47374/1‑37                                                                                                        GCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGAT                                                                                                                 <  1:520193/76‑1                                                                                                                                                                                                                                                                                                    CCTGGCTGCAGCCATCAGCGAAGAGCGTCATACCATCGAAGATGTGCTTGAGCCGTACCTGATTCAGCAGGGCTACATCATGCGCACGCCACGCGGCCGCGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1395118‑1395221 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccacgcggccgcgtggCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCACGCCCACCGGGCCGCCATCGAACTTCTCGATCATGGTCAGCAGCAGGCGACGGTCGGAATGGTCGAAACCACGCTCGTCGACATCCAGCAG  <  AE015451/1395205‑1395020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.