New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2088015 =	33 (0.760)	5 (0.120)	4/330	NT	13.5%	intergenic (+828/+90)	PP_1865/aroH	transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
	?	AE015451	4022289 =	32 (0.760)					coding (17/942 nt)	PP_3547	putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain

CGAATGCATCGGTGGTGCCCGGCCGATCACCGAGGATGCGTTGTCTGACCGGTATCACACCCATTGTGATCCGCGGATGAATGCCGATCAGTCGCTGGAGTTGGCGTTCCTGATTGCCGAAACCCTCAAGCAGGTACGGCGCTAAGCGCTTTTCGCTTTTGATCGTGCTTCTAAGTGCGCGGTAGTTCAGGCAACGCAGATTGCGACTTCAGGAGGCCGAGTGGAGGCATTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2088249‑2088015 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcggAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTG  >  AE015451/4022289‑4022521                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGAATGCATCGGTGGTGCCCGGCCGATCACCGAGGATGCGTTGTCTGACCGGTATCACACCCATTGTGATCCGCGGATGAATGCCGATCAGTCGCTGGAGTTGGCGTTCCTGATTGCCGAAACCCTCAAGCAGGTACGGCGCTAAGCGCTTTTCGCTTTTGATCGTGCTTCTAAGTGCGCGGTAGTTCAGGCAACGCAGATTGCGACTTCAGGAGGCCGAGTGGAGGCATTGCG                                                                                                                                                                                                                                            >  2:409870/1‑234                            CACCGAGGATGCGTTGTCTGACCGGTATCACACCCATTGTGATCCGCGGATGAATGCCGATCAGTCGCTGGAGTTGGCGTTCCTGATTGCCGAAACCCACAAGCAGGTACGGCGCTAAGCGCTTTTCGCTTTTGATCGTGCTTCTAAGTGCGCGGTAGTTCAGGCAACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCG                                                                                                                                                                                                                 >  2:384363/1‑234                                                   GGTATCACACCCATTGTGATCCGCGGATGAATGCCGATCAGTCGCTGGAGTTGGCGTTCCTGATTGCCGAAACCCTCAAGCAGGTACGGCGCTAAGCGCTTTTCGCTTTTGATCGTGCTTCTAAGTGCGCGGTAGTTCAGGCAACGCAGATTGCGACTTCAGGAGGCCGAGTGGAGGCATTGCGGAGGGAGATGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAtg                                                                                                                                                                                             <  1:362235/231‑3                                                    GTATCACACCCATTGTGATCCGCGGATGAATGCCGATCAGTCGCTGGAGTTGGCGTTCCTGATTGCCGAAACCCACAAGCAGGTACGGCGCTAAGCGCTTTTCGCTTTTGATCGTGCTTCTAAGTGCGCGGTAGTTCAGGCAACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGC                                                                                                                                                                                      <  1:384365/236‑1                                                                        CGCGGATGAATGCCGATCAGTCGCTGGAGTTGGCGTTCCTGATTGCCGAAACCCTCAAGCAGGTACGGCGCTAAGCGCTTTTCGCTTTTGATCGTGCTTCTAAGTGCGCGGTAGTTCAGGCAACGCAGATTGCGACTTCAGGAGGCCGAGTGGAGGCATTGCGGAGGGAGATGACGGG                                                                                                                                                                                                                             >  1:479806/1‑178                                                                        CGCGGATGAATGCCGATCAGTCGCTGGAGTTGGCGTTCCTGATTGCCGAAACCCTCAAGCAGGTACGGCGCTAAGCGCTTTTCGCTTTTGATCGTGCTTCTAAGTGCGCGGTAGTTCAGGCAACGCAGATTGCGACTTCAGGAGGCCGAGTGGAGGCATTGCGGAGGGAGATGACGGG                                                                                                                                                                                                                             <  2:479804/178‑1                                                                                                                                                                                                                                           GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTG  >  1:676323/1‑234                                                                                                                                                                                                                                           GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTG  <  2:676321/234‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGAATGCATCGGTGGTGCCCGGCCGATCACCGAGGATGCGTTGTCTGACCGGTATCACACCCATTGTGATCCGCGGATGAATGCCGATCAGTCGCTGGAGTTGGCGTTCCTGATTGCCGAAACCCTCAAGCAGGTACGGCGCTAAGCGCTTTTCGCTTTTGATCGTGCTTCTAAGTGCGCGGTAGTTCAGGCAACGCAGATTGCGACTTCAGGAGGCCGAGTGGAGGCATTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2088249‑2088015 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcggAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTG  >  AE015451/4022289‑4022521

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.