New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2498041	55 (1.260)	4 (0.100)	4/320	NT	8.0%	intergenic (+142/‑59)	PP_2192/PP_2193	putative RNA polymerase sigma‑70 factor, ECF subfamily/transmembrane sensor protein/Outer membrane ferric siderophore receptor
	?	AE015451	= 2498178	40 (0.980)					coding (79/2454 nt)	PP_2193	Outer membrane ferric siderophore receptor

GGGTGTTTGACCTGGATGAACCTGAGGCCCTGTTGCGGACGTTGGAGCAGCGGTATGGCCTGAAGGTGACTTACCTGCCGTGGTTGGCCGTGGTGCATTGATCAGCCTGTTCCGGCCTCTTAGCGGCAAGCCCGTTCCTGCACAGATCGCACAATCTTCAGGCGGGCGCAGTCGTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGACAGAAATAAAAATATTTTCCATTTGGCACTGCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2497799‑2498041 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcactgcaagACATCAAGGCATGGTGAAAAGAACCGCGACGGCGGTGCAAGGGCTTGAGCATCAGAGGCACGAATGAGCTTCCTGACAAGTCGTAAATGAGAATGGGTTGCTGATCAGTCTCACTACGACGATCTGGCTTGCAGGAACTTGCAGTGCCAAATGGAAAATATTTTTATTTCTGTCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAACGACTGCGCCCGCCTGAAGATTGTGC  <  AE015451/2498178‑2497947                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGGTGTTTGACCTGGATGAACCTGAGGCCCTGTTGCGGACGTTGGAGCAGCGGTATGGCCTGAAGGTGACTTACCTGCCGTGGTTGGCCGTGGTGCATTGATCAGCCTGTTCCGGCCTCTTAGCGGCAAGCCCGTTCCTGCACAGATCGCACAATCTTCAGGCGGGCGCAGTCGTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGACAGAAATAAAAATATTTTCCATTTGGCA                                                                                                                                                                                                                                                 >  1:353113/1‑236   GTGTTTGACCTGGATGAACCTGAGGCCCTGTTGCGGACGTTGGAGCAGCGGTATGGCCTGAAGGTGACTTACCTGCCGTGGTTGGCCGTGGTGCATTGATCAGCCTGTTCCGGCCTCTTAGCGGCAAGCCCGTTCCTGCACAGATCGCACAATCTTCAGGCGGGCGCAGTCGTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGACAGAAATAAAAATATTTTCCATTTGGCACT                                                                                                                                                                                                                                               <  1:413888/236‑1     GTTTGACCTGGATGAACCTGAGGCCCTGTTGCGGACGTTGGAGCAGCGGTATGGCCTGAAGGTGACTTACCTGCCGTGGTTGGCCGTGGTGCATTGATCAGCCTGTTCCGGCCTCTTAGCGGCAAGCCCGTTCCTGCACAGATCGCACAATCTTCAGGCGGGCGCAGTCGTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGACAGAAATAAAAATATTTTCCATTTGGCACTGC                                                                                                                                                                                                                                             >  1:635381/1‑236                               gtTTGCGGACGTTGGAGCAGCGGTATGGCCTGAAGGTGACTTACCTGCCGTGGTTGGCCGTGGTGCATTGATCAGCCTGTTCCGGCCTCTTAGCGGCAAGCCCGTTCCTGCACAGATCGCACAATCTTCAGGCGGGCGCAGTCGTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGACAGAAATAAAAATATTTTCCATTTGGCACTGCA                                                                                                                                                                                                                                            <  1:612835/209‑1                                                                                                                               CAAGCCCGTTCCCGCACAGATCGCACAATCTTCAGGCGGGCGCAGTCGTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGACAGAAATAAAAATATTTTCCATTTGGCACTGCAAGACATCAAGGCATGGTGAAAAGAACCGCGACGGCGGTGCAAGGGCTTGAGCATCAGAGGCACGAATGAGCTTCCTGACAAGTCGTAAATGAGAATGGGTTGCT                                                                                                                                    <  2:207281/219‑1                                                                                                                                    CCGTTCCTGCACAGATCGCACAATCTTCAGGCGGGCGCAGTCGTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGACAGAAATAAAAATATTTTCCATTTG                                                                                                                                                                                                                                                    <  1:570377/102‑1                                                                                                                                            GCACAGATCGCACAATCTTCAGGCGGGCGCAGTCGTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGACAGAAATAAAAATATTTTCCATTTGGCACTGCAAGACATCAAGGCATGGTGAAAAGAACCGCGACGGCGGTGCAAGGGCTTGAGCATCAGAGGCAC                                                                                                                                                                             <  2:297906/165‑1                                                                                                                                                                                                                             TATTTTCCATTTGGCACTGCAAGACATCAAGGCATGGTGAAAAGAACCGCGACGGCGGTGCAAGGGCTTGAGCATCAGAGGCACGAATGAGCTTCCTGACAAGTCGTAAATGAGAATGGGTTGCTGATCAGTCTCACTACGAC                                                                                                                  <  1:208953/143‑1                                                                                                                                                                                                                             TATTTTCCATTTGGCACTGCAAGACATCAAGGCATGGTGAAAAGAACCGCGACGGCGGTGCAAGGGCTTGAGCATCAGAGGCACGAATGAGCTTCCTGACAAGTCGTAAATGAGAATGGGTTGCTGATCAGTCTCACTACGAC                                                                                                                  >  2:208951/1‑143                                                                                                                                                                                                                                                CAAGACATCAAGGCATGGTGAAAAGAACCGCGACGGCGGTGCAAGGGCTTGAGCATCAGAGGCACGAATGAGCTTCCTGACAAGTCGTAAATGAGAATGGGTTGCTGATCAGTCTCACTACGACGATCTGGCTTGCAGGAACTTGCAGTGCCAAATGGAAAATATTTTTATTTCTGTCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAACGACTGCGCCCGCCTGAAGATTGTGC  >  1:305492/1‑236                                                                                                                                                                                                                                                CAAGACATCAAGGCATGGTGAAAAGAACCGCGACGGCGGTGCAAGGGCTTGAGCATCAGAGGCACGAATGAGCTTCCTGACAAGTCGTAAATGAGAATGGGTTGCTGATCAGTCTCACTACGACGATCTGGCTTGCAGGAACTTGCAGTGCCAAATGGAAAATATTTTTATTTCTGTCCGGCCTCTTCGCGGGC                                            >  2:457775/1‑194                                                                                                                                                                                                                                                 AAGACATCAAGGCATGGTGAAAAGAACCGCGACGGCGGTGCAAGGGCTTGAGCATCAGAGGCACGAATGAGCTTCCTGACAAGTCGTAAATGAGAATGGGTTGCTGATCAGTCTCACTACGACGATCTGGCTTGCAGGAACTTGCAGTGCCAAATGGAAAATATTTTTATTTCTGTCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAACGACTGCGCCCGCCTGAAGATTGTGC  <  1:317463/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGGTGTTTGACCTGGATGAACCTGAGGCCCTGTTGCGGACGTTGGAGCAGCGGTATGGCCTGAAGGTGACTTACCTGCCGTGGTTGGCCGTGGTGCATTGATCAGCCTGTTCCGGCCTCTTAGCGGCAAGCCCGTTCCTGCACAGATCGCACAATCTTCAGGCGGGCGCAGTCGTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGACAGAAATAAAAATATTTTCCATTTGGCACTGCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2497799‑2498041 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcactgcaagACATCAAGGCATGGTGAAAAGAACCGCGACGGCGGTGCAAGGGCTTGAGCATCAGAGGCACGAATGAGCTTCCTGACAAGTCGTAAATGAGAATGGGTTGCTGATCAGTCTCACTACGACGATCTGGCTTGCAGGAACTTGCAGTGCCAAATGGAAAATATTTTTATTTCTGTCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAACGACTGCGCCCGCCTGAAGATTGTGC  <  AE015451/2498178‑2497947

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.