New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3377225 =	62 (1.420)	4 (0.090)	4/330	NT	6.5%	coding (345/906 nt)	tnpB	Tn4652, transposase subunit B
	?	AE015451	3377551 =	56 (1.330)					coding (671/906 nt)	tnpB	Tn4652, transposase subunit B

AGGCCGACGAGTGTGAAGCGCCTGTTCCAGAGCATCCAGAACAAACTCTGTGCGCATGTGTCGGCTGACACGCCAGCCTACGATAAACCGTGAGTAGACATCGACGATGAACGCCACATAAGCAAATCCCTGCCAGGTTGAAACGAATGTGAAATCGGCGACCCAGAGCTGATTGGGACGTTCGGCCGTGAACTGGCGCTTTACCAGATCCCTGGGATTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3377447‑3377225 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggcaATACCGGTGACAGCTACGACAACGCACTGGCAGAGACCATCAACGGCCTCTACAAGACCGAACTGATCCATAAGCGAGGGCCGTGGAAAAGCGTAGACAGTCTGGAGTGGGAAACGCTGAAGTGGGTGACCTGGTTCAACCATCAGCGCCTGCTGGAGCCAATTGGAAATAGGCCACCGGCCGAGTTTGAGG  >  AE015451/3377551‑3377742                                                                                                                                                                                                                                                                                                                                                                                                                                 AGGCCGACGAGTGTGAAGCGCCTGTTCCAGAGCATCCAGAACAAACTCTGTGCGCATGTGTCGGCTGACACGCCAGCCTACGATAAACCGTGAGTAGACATCGACGATGAACGCCACATAAGCAAATCCCTGCCAGGTTGAAACGAATGTGAAATCGGCGACCCAGAGCTGATTGGGACGTTCGGCCGTGAACTGGCGCTTTACCAGATCCCTGGGATT                                                                                                                                                                                                      <  1:386672/219‑1                                                     CGCATGTGTCGGCTGACACGCCAGCCTACGATAAACCGTGAGTAGACATCGACGATGAACGCCACATAAGCAAATCCCTGCCAGGTTGAAACGAATGTGAAATCGACGACCCAGAGCTGATTGGGACGTTCGGCCGTGAACTGGCGCTTTACCAGATCCCTGGGATTGGCAATACCGGTGACAGCTACGACAACGCACTGGCAGAGACCATC                                                                                                                                                         >  2:594182/1‑212                                                                                                                                        GGTTGAAACGAATGTGAAATCGGCGACCCAGAGCTGATTGGGACGTTCGGCCGTGAACTGGCGCTTTACCAGATCCCTGGGATTGGCAATACCGGTGACAGCTACGACAACGCACTGGCAGAGACCATCAACGGCCTCTACAAGACCGAA                                                                                                                                    >  1:130038/1‑150                                                                                                                                        GGTTGAAACGAATGTGAAATCGGCGACCCAGAGCTGATTGGGACGTTCGGCCGTGAACTGGCGCTTTACCAGATCCCTGGGATTGGCAATACCGGTGACAGCTACGACAACGCACTGGCAGAGACCATCAACGGCCTCTACAAGACCGAA                                                                                                                                    <  2:130036/150‑1                                                                                                                                                                                    GTTCGGCCGTGAACTGGCGCTTTACCAGATCCCTGGGATTGGCAATACCGGTGACAGCTACGACAACGCACTGGCAGAGACCATCAACGGCCTCTACAAGACCGAACTGATCCATAAGCGAGGGCCGTGGAAAAGCGTAGACAGTCTGGAGTGGGAAACGCTGAAGTGGGTGACCTGGTTCAACCATCAGCACCTGCTGGAGCCAATTGGAAATAGGCCACCGGCCGAGTTTGAGG  <  1:594184/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                 AGGCCGACGAGTGTGAAGCGCCTGTTCCAGAGCATCCAGAACAAACTCTGTGCGCATGTGTCGGCTGACACGCCAGCCTACGATAAACCGTGAGTAGACATCGACGATGAACGCCACATAAGCAAATCCCTGCCAGGTTGAAACGAATGTGAAATCGGCGACCCAGAGCTGATTGGGACGTTCGGCCGTGAACTGGCGCTTTACCAGATCCCTGGGATTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3377447‑3377225 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggcaATACCGGTGACAGCTACGACAACGCACTGGCAGAGACCATCAACGGCCTCTACAAGACCGAACTGATCCATAAGCGAGGGCCGTGGAAAAGCGTAGACAGTCTGGAGTGGGAAACGCTGAAGTGGGTGACCTGGTTCAACCATCAGCGCCTGCTGGAGCCAATTGGAAATAGGCCACCGGCCGAGTTTGAGG  >  AE015451/3377551‑3377742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.