New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3690611	60 (1.370)	4 (0.100)	4/322	NT	7.1%	coding (612/660 nt)	PP_3256	Glycosyl transferase, group 2 family protein
	?	AE015451	= 3690717	48 (1.170)					coding (506/660 nt)	PP_3256	Glycosyl transferase, group 2 family protein

GGCGACACAGGGGCGGCCGAGAAAGGTGCGGACATCCTCGACCTGACCGAACTGCTCAAGCGCAGCCTGGGTGGCAAGAAACCGGTGAAGAAGACGCGAAAGGCTTCATGAACACGGCCAATGCCATTGAGTTCAAGACTGCGCCTGCAACCCAGCCAGGTAATCACCAAACCCCTCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3690431‑3690611 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccctcgcggCGCATGAAGATGTGCAGCTGGTCAGCGACCTACAGGCCAGCGGCGCCCAGATCGTCTGGACCGCCAGGCATAGTGTGGCCACCAGCAGTCGACGTGACAGCCGCGCCCGCGAGGGGTTTGGTGATTACCTGGCTGGGTTGCAGGCGCAGTCTTGAACTCAATGGCATTGGCCGTGTTCATGAAGCCTTTCGCGTCTTCTTCACCGGTTTCTTGCCACCCAGGCTGCGCTTGAGCA  <  AE015451/3690717‑3690483                                                                                                                                                                                                                                                                                                                                                                                                                                  GGCGACACAGGGGCGGCCGAGAAAGGTGCGGACATCCTCGACCTGACCGAACTGCTCAAGCGCAGCCTGGGTGGCAAGAAACCGGTGAAGAAGACGCGAAAGGCTTCATGAACACGGCCAATGCCATTGAGTTCAAGACTGCGCCTGCAACCCAGCCAGGTAATCACCAAACCCCTCGCagg                                                                                                                                                                                                                                            <  1:120140/182‑4              CGGCCGAGAAAGGTGCGGACATCCTCGACCTGACCGAACTGCTCAAGCGCAGCCTGGGTGGCAAGAAACCGGTGAAGAAGACGCGAAAGGCTTCATGAACACGGCCAATGCCATTGAGTTCAAGACTGCGCCTGCAACCCAGCCAGGTAATCACCAAACCCCTCGCGGCGCATGAAGATGTGCAGCTGGTCAGCGACCTACAGGCCAGCGGCGCCCAGATCGTCTGGACCGCCAGG                                                                                                                                                                         <  1:631165/236‑1                                                                                                   AAAGGCTTCATGAACACGGCCAATGCCATTGAGTTCAAGACTGCGCCTGCAACCCAGCCAGGTAATCACCAAACCCCTCGCGGCGCATGAAGATGTGCAGCTGGTCA                                                                                                                                                                                                                     >  1:223892/1‑107                                                                                                   AAAGGCTTCATGAACACGGCCAATGCCATTGAGTTCAAGACTGCGCCTGCAACCCAGCCAGGTAATCACCAAACCCCTCGCGGCGCATGAAGATGTGCAGCTGGTCA                                                                                                                                                                                                                     <  2:223890/107‑1                                                                                                                                                              AGGTAATCACCAAACCCCTCGCGGCGCATGAAGATGTGCAGCTGGTCAGCGACCTACAGGCCAGCGGCGCCCAGATCGTCTGGACCGCCAGGCATAGTGTGGCCACCAGCAGTCGCCGTGACATCCGCGCCCGCCAGCGGTa                                                                                                                       >  2:37756/1‑141                                                                                                                                                                            CCCCTCGCGGCGCATGAAGATGTGCAGCTGGTCAGCGACCTACAGGCCAGCGGCGCCCAGATCGTCTGGACCGCCAGGCATAGTGTGGCCACCAGCAGTCGACGTGACAGCCGCGCCCGCGAGGGGTTTGGTGATTACCTGGCTGGGTTGCAGGCGCAGTCTTGAACTCAATGGCATTGGCCGTGTTCATGAAGCCTTTCGCGTCTTCTTCACCGGTTTCTTGCCACCCAGGCTG            <  1:697980/235‑1                                                                                                                                                                                 CGCGGCGCATGAAGATGTGCAGCTGGTCAGCGACCTACAGGCCAGCGGCGCCCAGATCGTCTGGACCGCCAGGCATAGTGTGGCCACCAGCAGTCGACGTGACAGCCGCGCCCGCGAGGGGTTTGGTGATTACCTGGCTGGGTTGCAGGCGCAGTCTTGAACTCAATGGCATTGGCCGTGTTCATGAAGCCTTTCGCGTCTTCTTCACCGGTTTCTTGCCACCCAGGCTGCGCTT       >  1:304324/1‑235                                                                                                                                                                                 CGCGGCGCATGAAGATGTGCAGCTGGTCAGCGACCTACAGGCCAGCGGCGCCCAGATCGTCTGGACCGCCAGGCATAGTGTGGCCACCAGCAGTCGACGTGACAGCCGCGCCCGCGAGGGGTTTGGTGATTACCTGGCTGGGTTGCAGGCGCAGTCTTGAACTCAATGGCATTGGCCGTGTTCATGAAGCCTTT                                                <  2:390052/194‑1                                                                                                                                                                                     GCGCATGAAGATGTGCAGCTGGTCAGCGACCTACAGGCCGGCGGCGCCCAGATCGTCT                                                                                                                                                                                    <  2:360310/58‑1                                                                                                                                                                                     GCGCATGAAGATGTGCAGCTGGTCAGCGACCTACAGGCCAGCGGCGCCCAGATCGTCTGGACTGCCAGGCATAGTGTGGCCACCAGCAGTCGACGTGACAGCCGCGCCCGCGAGGGGTTTGGTGATTACCTGGCTGGGTTGCAGGCGCAGTCTTGAACTCAATGGCATTGGCCGTGTTCATGAAGCCTTTCGCGTCTTCTTCACCGGTTTCTTGCCACCCAGGCTGCGCTTGAGCA  <  1:660813/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                  GGCGACACAGGGGCGGCCGAGAAAGGTGCGGACATCCTCGACCTGACCGAACTGCTCAAGCGCAGCCTGGGTGGCAAGAAACCGGTGAAGAAGACGCGAAAGGCTTCATGAACACGGCCAATGCCATTGAGTTCAAGACTGCGCCTGCAACCCAGCCAGGTAATCACCAAACCCCTCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3690431‑3690611 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccctcgcggCGCATGAAGATGTGCAGCTGGTCAGCGACCTACAGGCCAGCGGCGCCCAGATCGTCTGGACCGCCAGGCATAGTGTGGCCACCAGCAGTCGACGTGACAGCCGCGCCCGCGAGGGGTTTGGTGATTACCTGGCTGGGTTGCAGGCGCAGTCTTGAACTCAATGGCATTGGCCGTGTTCATGAAGCCTTTCGCGTCTTCTTCACCGGTTTCTTGCCACCCAGGCTGCGCTTGAGCA  <  AE015451/3690717‑3690483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.