New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3970595 =	NA (NA)	4 (0.100)	4/310	NT	NA	coding (514/1536 nt)	PP_3501	transposase
	?	AE015451	3970611 =	NA (NA)					coding (530/1536 nt)	PP_3501	transposase

GTTTCATCAGCGTGAATCACGCCCTGGTTCAGCACCGCTTCACGTAGTGCATCGACCAGTGGCTGGAGTCGCACACCGGTTTGTCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTACCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3970845‑3970595 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccggtaccggcgcAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGTGTGCGACTCCAGCCACTGGTCGATGCACTACGTGAAGCGGTGCTGAACCAGGGCGTGATTCACGCTGATGA  >  AE015451/3970611‑3970842                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     gaTTCATCAGCGTGAAGCACGCCCTGGTTCAGTACCGCTTCACGTAGTGCATCGACCAGTGGCTGGAGTCGCACACCGGTTTGTCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTG                                                                                                                                                                                                                                                         <  1:760779/234‑1                                                                                            ACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGACACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTACCGGCG                                                                                                                                                                                                                                           >  2:473462/1‑159                                                                                                                               GCGCGGCCAAGGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTA                                                                                                                                                                                                                                                 <  2:119349/118‑1                                                                                                                                                                                      CCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGG                                                                                                                                                                                                   <  2:791081/109‑1                                                                                                                                                                                        cCCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATACCCTGCGCCGGTACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGC                                                                                                                                                                          <  1:217346/131‑1                                                                                                                                                                                                                   tgCGGGACACCTTGGCCGATAACCGGCGCCGGTCCCGGCGCAGGTTATAGACAAAGGTGTCCCGCCCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGT                                                                         <  2:217344/200‑1                                                                                                                                                                                                                                 GTCGATAACCTGCGCCGGTACCGGCGCAGGTTATCGACAAAGGTGT                                                                                                                                                                                                                       <  1:344119/46‑1                                                                                                                                                                                                                                              GCCGGTACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGT                                                                         >  1:225/1‑175                                                                                                                                                                                                                                                CGGTACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGTGTGCGACTCCAGCCACTGGTCGATGCACTACGTGAAGCGGTGCTGAACCAGGGCGTGATTCAC          <  1:188474/236‑1                                                                                                                                                                                                                                                  GTACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGT                                                                                      >  1:247470/1‑158                                                                                                                                                                                                                                                   TACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGTGTGCGACTCCAGCCACTGGTCG                                                   >  2:377716/1‑192                                                                                                                                                                                                                                                      CGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCCGTGGGTCG                                                                                    >  2:255844/1‑156                                                                                                                                                                                                                                                        GCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGTGTGCGACTCCAGCCACTGGTCGATGCACTACGTGAAGCGGTGCTGAACCAGGGCGTGATTCACGCTGATGA  <  1:353730/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTTTCATCAGCGTGAATCACGCCCTGGTTCAGCACCGCTTCACGTAGTGCATCGACCAGTGGCTGGAGTCGCACACCGGTTTGTCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTACCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3970845‑3970595 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccggtaccggcgcAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGTGTGCGACTCCAGCCACTGGTCGATGCACTACGTGAAGCGGTGCTGAACCAGGGCGTGATTCACGCTGATGA  >  AE015451/3970611‑3970842

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.