New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | = 4601405 | 51 (1.170) | 3 (0.070) | 3/328 | NT | 5.6% | coding (487/633 nt) | PP_4073 | conserved exported protein of unknown function |
? | AE015451 | = 4601409 | 52 (1.240) | coding (483/633 nt) | PP_4073 | conserved exported protein of unknown function |
GAGCCTCGTCGATAAGCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4601279‑4601405 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcagAGGCCTGCCGGGTATCGAGCAGATCAAGCAATTGATCGGGGCCCATCGCATTCACGTAGAGAGCGACAACCCTGCCGTTGATGGACTCGTTTTTGACGCTCAGGGGCTGGACCCGCTTATCGACGAGGCTCGCAAGACATGTCGCTGGTAGCTGATGTCGAGGCGCAAGAAATCACACGGTTGCTCGCACCCATCGATGCCCAGGTGCCGGCGGGGCTG < AE015451/4601409‑4601191 GAGCCTCGTCGATAAGCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAG > 1:503297/1‑127 CGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGAGGCCTGCCGGGTATCGAGCAGATCAAGCAATTGATCGGGGCCCATCGCATTCACGTAGAGAGCGACAACCCTGCCGTTGATGGACTCGTTTTTGACGCTCAGGGGCTGGACCCGCTTATCGACGAGGCTCGCAAG > 1:752557/1‑188 GATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGAGGCCTGCCGGGTATCGAGCAGATCAAGCAATTGATCGGG > 2:215093/1‑83 GCTCGATACCCGGCAGAGGCCTGCCGGGTATCGAGCAGATCAAGCAATTGATCGGGGCCCATCGCATTCACGTAGAGAGCGACAACCCTGCCGTTGATGGACTCGTTTTTGACGCTCAGGGGCTGGACCCGCTTATCGACGAGGCTCGCAAGACATGTCGCTGGTAGCTGATGTCGAGGCGCAAGAAATCACACGGTTGCTCGCACCCATCGATGCCCAGGTGCCGGCGGGGCTG > 1:670831/1‑235 GAGCCTCGTCGATAAGCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4601279‑4601405 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcagAGGCCTGCCGGGTATCGAGCAGATCAAGCAATTGATCGGGGCCCATCGCATTCACGTAGAGAGCGACAACCCTGCCGTTGATGGACTCGTTTTTGACGCTCAGGGGCTGGACCCGCTTATCGACGAGGCTCGCAAGACATGTCGCTGGTAGCTGATGTCGAGGCGCAAGAAATCACACGGTTGCTCGCACCCATCGATGCCCAGGTGCCGGCGGGGCTG < AE015451/4601409‑4601191 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |