New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 4743577 = | 51 (1.170) | 7 (0.170) | 7/326 | NT | 13.0% | coding (415/1593 nt) | PP_4197 | Transcriptional regulator, GntR family |
? | AE015451 | 4743666 = | 45 (1.080) | coding (326/1593 nt) | PP_4197 | Transcriptional regulator, GntR family |
ATGATATCCGTCGCGGTGTCTACCAGCCAGGCGAGCGGGTACCCTCCGTGCGCAAGATGAGCGCCCAGCTCAATGTCAGCCATGCCACGGTGTTGCAGGCCTATGCCAATCTCGAGGACCAAGGGCTTATCCGGGCGCGGCCGCAGTCTGGCTATTACGTGCACCAGACCCCTGCCTTGACCGCGCAAACCCCCGACATCGCTCGGGTGGAGCGCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4743795‑4743577 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcccggATAAGCCCTTGGTCCTCGAGATTGGCATAGGCCTGCAACACCGTGGCATGGCTGACATTGAGCTGGGCGCTCATCTTGCGCACGGAGGGTACCCGCTCGCCTGGCTGGTAGACACCGCGACGGATATCATCGGCCAGTTGCTGGGCGATACGCTGGTACAGCAGCAGGTTGGTCATGTCGACATGCTCGTTGTTCTTGTACGGGTCACTGACGGTAGAGGATACCGTAACAG > AE015451/4743666‑4743897 ATGATATCCGTCGCGGTGTCTGCCAGCCAGGCGAGCGGGTACCCTCCGTGCGCAAGATGAGCGCCCAGCTCAATGTCAGCCATGCCACGGTGTTGCAGGCCTATGCCAATCTCGAGGACCAAGGGCTTATCCGGGCGCGGCCGCAGTCTGGCTATTACGTGCACCAGACCCCTGCCTTGACCGCGCAAACCCCCGACATCGCTCGGGTGGAGCGCCCGGATAAGCCCTTGGTCCTC < 1:184118/236‑1 CGGTGTCTACCAGCCAGGCGAGCGGGTACCCTCCGTGCGCAAGATGAGCGCCCAGCTCAATGTCAGCCATGCCACGGTGTTGCAGGCCTATGCCAATCTCGAGGACCAAGGGCTTATCCGGGCGCGGCCGCAGTCTGGCTATTACGTGCACCAGACCCCTGCCTTGACCGCGCAAACCCCCGACATCGCTCGGGTGGAGCGCCCGGATAAGCCCTTGGTCCTCGAGATTGG < 2:586054/231‑1 GTGTCTACCAGCCAGGCGGGCGGGTACCCTCCGTGCGCAAGATGAGCGCCCAGCTCAATGTCAGCCATGCCACGGTGTTGCAGGCCTATGCCAATCTCGAGGACCAAGGG‑TTATCCGGGCGCGGCCGCAGTCTGGCTATTACGTGCACCAGACCCCTGCCTTGACCGCGCAAACCCCCGACATCGCTCGGGTGGAGCGCCCGG < 1:67543/203‑1 GAGCGGGTACCCTCCGTGCGCAAGATGAGCGCCCAGCTCAATGTCAGCCATGCCACGGTGTTGCAGGCCTATGCCAATCTCGAGGACCAAGGGCTTATCCGGGCGCGGCCGCAGTCTGGCTATTACGTGCACCAGACCCCTGCCTTGACCGCGCAAACCCCCGACATCGCTCGGGTGGAGCGCCCGGATAAGCCCTTGGTCCTCGAGATTGGCA < 2:307009/214‑1 tgCGTGCGCAAGATGAGCGCCCAGCTCAATGTCAGCCATGCCACGGTGTTGCAGGCCTATGCCAATCTCGAGGACCAAGGGCTTATCCGGGCGCGGCCGCAGTCTGGCTATTACGTGCACCAGACCCCTGCCTTGACCGCGCAAACCCCCGACATCGCTCGGGTGGAGCGCCCGGATAAGCCCTTGGTCCTCGA < 1:233864/192‑1 CCAATCTCGAGGACCAAGGGCTTATCCGGGCGCGGCCGCAGTCTGGCTATTACGTGCACCAGACCCCTGCCTTGACCGCGCAAACCCCCGACATCGCTCGGGTGGAGCGCCCGGt > 2:655607/1‑114 CCGCGCAAACCCCCGACATCGCTCGGGTGGAGCGCCCGGATAAGCCCTTGGTCCTCGAGATTGGCATAGGCCTGCAACACCGTGGCATGGCTGACATTGAGCTGGGCGCTCATCTTGCGCACGGAGGGTACCCGCTCGCCTGGCTGGTAGACACCGCGACGGATATCATCGGCCAGTTGCTGGGCGATACGCTGGTACAGCCGCAGGTTGGTCATGTCG > 2:782797/1‑219 AACCCCCGACATCGCTCGGGTGGAGCGCCCGGATAAGCCCTTGGTCCTCGAGATTGGCATAGGCCTGCAACACCGTGGCATGGCTGACATTGAGCTGG < 1:287314/98‑1 AACCCCCGACATCGCTCGGGTGGAGCGCCCGGATAAGCCCTTGGTCCTCGAGATTGGCATAGGCCTGCAACACCGTGGCATGGCTGACATTGAGCTGG > 2:287312/1‑98 GCCCGGATAAGCCCTTGGTCCTCGAGATTGGCATAGGCCTG < 2:346123/41‑1 CCGGATAAGCCCTTGGTCCTCGAGATTGGCATAGGCCTGCAACACCGTGGCATGGCTGACATTGAGCTGGGCGCTCATCTTGCGCACGGAGGGTACCCGCTCGCCTGGCTGGTAGACACCGCGACGGATATCATCGGCCAGTTGCTGGGCGATACGCTGGTACAGCAGCAGGTTGGTCATGTCGACATGCTCGTTGTTCTTGTACGGGTCACTGACGGTAGAGGATACCGTAACAG > 1:571255/1‑236 CGGATAAGCCCTTGGTCCTCGAGATTGGCATAGGCCTGCAACACCGTGGCATGGCTGACATTGAGCTGGGCGCTCATCTTGCGCACGGAGGGTACCCGCTCGCCTGGCTGGTAGACACCGCGACGGATATCATCGGCCAGTTGCTGGGCGATACGCTGGTACAGCAGCAGGTTGGTCATGTCGACATGCTCGTTGTTCTTGTACGGGTCACTGACGGTAGAGGATACCGTAACA > 2:408282/1‑234 ATGATATCCGTCGCGGTGTCTACCAGCCAGGCGAGCGGGTACCCTCCGTGCGCAAGATGAGCGCCCAGCTCAATGTCAGCCATGCCACGGTGTTGCAGGCCTATGCCAATCTCGAGGACCAAGGGCTTATCCGGGCGCGGCCGCAGTCTGGCTATTACGTGCACCAGACCCCTGCCTTGACCGCGCAAACCCCCGACATCGCTCGGGTGGAGCGCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4743795‑4743577 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcccggATAAGCCCTTGGTCCTCGAGATTGGCATAGGCCTGCAACACCGTGGCATGGCTGACATTGAGCTGGGCGCTCATCTTGCGCACGGAGGGTACCCGCTCGCCTGGCTGGTAGACACCGCGACGGATATCATCGGCCAGTTGCTGGGCGATACGCTGGTACAGCAGCAGGTTGGTCATGTCGACATGCTCGTTGTTCTTGTACGGGTCACTGACGGTAGAGGATACCGTAACAG > AE015451/4743666‑4743897 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |