New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5337245	45 (1.030)	4 (0.100)	4/328	NT	8.3%	coding (695/1443 nt)	PP_4696	Nitrogen regulation protein NR(I)
	?	AE015451	= 5337247	45 (1.070)					coding (697/1443 nt)	PP_4696	Nitrogen regulation protein NR(I)

TCCCCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5337185‑5337245 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcgcTGGCGCCGGTGAACGCGCCTTTTTCGTGGCCGAACAGTTCGGATTCGATCAGCGTTTCGGGGATGGCCGCGCAGTTCACCGAGATCATCGGTGCCTTGGCCCGGCGAGACAGGTTGTGCAGGGCGCGGGCCACCAGCTCTTTACCGGTGCCCGACTCGCCCTGGATCAGCACATT  <  AE015451/5337247‑5337073                                                                                                                                                                                                                                              TCCCCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGCTGGCGCCGGTGAACGCGCCTTTTTCGTGGCCGAACAGTTCGGATTCGATCAGCGTTTCGGGGATGGCCGCGCAGTTCACCGAGATCATCGGTGCCTTGGCCCGGCGAGACAGGTTGTGCAGGGCGCGGGCCACCAGCTCTTTACCGGTGCCCGACTCGCCCTGGATCAG        >  1:255610/1‑230   CCCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGCTGGCGCCGGTGAACGCGCCTTTTTCGTGGCCGAACAGTTCGGATTCGATCAGCGTTTCGGGGATGGCCGCGCAGTTCACCGAGATCATCGGTGC                                                                                   >  2:646459/1‑153                                           AAGGCGCGTTCACCGGCGCTGGCGCCGGTGAACGCGCCTTTTTCGTGGCCGAACAGTTCGGATTCGATCAGCGTTTCGGGGATGGCCGCGCAGTTCACCGAGATCATCGGTGCCTTGGCCCGGCGAGACAGGTTGTGCAGGGCGCGGGCCACCAGCTCTTTACCGGTGCCCGACTCGCCCTGGATCAGCACATT  >  1:513059/1‑194                                           AAGGCGCGTTCACCGGCGCTGGCGCCGGTGAACGCGCCTTTTTCGTGGCCGAACAGTTCGGATTCGATCAGCGTTTCGGGGATGGCCGCGCAGTTCACCGAGATCATCGGTGCCTTGGCCCGGCGAGACAGGTTGTGCAGGGCGCGGGCCACCAGCTCTTTACCGGTGCCCGACTCGCCCTGGATCAGCACATT  <  2:513057/194‑1                                                       CCGGCGCTGGCGCCGGTGAACGCGCCTTTTTCGTGGCCGAACAGTTCGGATTCGATCAGCGTTTCGGGGATGGCCGCGCAGTTCACCGAGATCATCGGTGCCTTGGCCCGGCGAGACAGGTTGTGCAGGGCGCGGGCCACCAGCTCTTTACCGGTGCCCGACTCGCCCTGGATCAGCACATT  >  2:209403/1‑182                                                          GCGCTGGCGCCGGTGAACGCGCCTTTTTCGTGGCCGAACAGTTCGGATTCGATCAGCGTTTCGGGGATGGCCGCGCAGTTCACCGAGATCATCGGTGCCTTGGCCCGGCGAGACAGGTTGTGCAGGGCGCGGGCCACCAGCTCTTTACCGGTGC                           >  2:451491/1‑154                                                                                                                                                                                                                                              TCCCCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5337185‑5337245 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcgcTGGCGCCGGTGAACGCGCCTTTTTCGTGGCCGAACAGTTCGGATTCGATCAGCGTTTCGGGGATGGCCGCGCAGTTCACCGAGATCATCGGTGCCTTGGCCCGGCGAGACAGGTTGTGCAGGGCGCGGGCCACCAGCTCTTTACCGGTGCCCGACTCGCCCTGGATCAGCACATT  <  AE015451/5337247‑5337073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.