New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5379888 =	46 (1.050)	5 (0.120)	5/326	NT	10.0%	coding (1473/1674 nt)	recN	factor used in recombination and DNA repair
	?	AE015451	5379905 =	46 (1.110)					coding (1490/1674 nt)	recN	factor used in recombination and DNA repair

CTGTGCCCGCGAATCGTCCTGGAAAAGCAAGGCTCAGGCCTTGCCGCTCACCACCATCTTGCGTGCATGGGCCAGGGATTCCTTGGTCAGGTCGATCCCGCCGAGCATCCGCGCCACTTCTTCCACGCGCTCACGCTTGCCAAGGCTAGCCACGGCGGTGTGGGTGGTGTCGCTGTTGCGCACCTTGTGCACGAACAGATGGTGATGCCCCTGCGCCGCCACCTGCGGCAGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5380122‑5379888 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggtggCGGCGCAGGGGCATCACCATCTGTTCGTGCACAAGGTGCGCAACAGCGACACCACCCACACCGCCGTGGCTAGCCTTGGCAAGCGTGAGCGCGTGGAAGAAGTGGCGCGGATGCTCGGCGGGATCGACCTGACCAAGGAATCCCTGGCCCATGCACGCAAGATGGTGGTGAGCGGCAAGGCCTGAGCCTTGCTTTTCCAGGACGAT  >  AE015451/5379905‑5380110                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTGTGCCCGCGAATCGTCCTGGAAAAGCAAGGCTCAGGCCTTGCCGCTCACCACCATCTTGCGTGCATGGGCCAGGGATTCCTTGGTCAGGTCGATCCCGCCGAGCATCCGCGCCACTTCTTCCACGCGCTCACGCTTGCCAAGGCTAGCCACGGCGGTGTGGGTGGTGTCGCTGTTGCGCACCTTGTGCACGAACAGATGGTGATGCCCCTGCGCCGCCACCTGCGGCAGGTGG                                                                                                                                                                                                                <  1:657238/235‑1      CCCGCGAATCGTCCTGGAAAAGCAAGGCTCAGGCCTTGCCGCTCACCACCATCTTGCGTGCATGGGCCAGGGATTCCTTGGTCAGGTCGATCCCGCCGAGCATCCGCGCCACTTCTTCCACGCGCTCACGCTTGCCAAGGCTAGCCACGGCGGTGTGGGTGGTGTCGCTGTTGCGCACCTTGTGCACGAACAGATGGTGATGCCCCTGCGCCGCCACCTGCGGCAGG                                                                                                                                                                                                                   >  2:503316/1‑227                                    AGGCCTTGCCGCTCACCACCATCTTGCGTGCATGGGCCAGGGATTCCTTGGTCAGGTCGATCCCGCCGAGCATCCGCGCCACTTCTTCCACGCGCTCACGCTTGCCAAGGCTAGCCACGGCGGTGTGGGTGGTGTCGCTGTTGCGCACCTTGTGCACGAACAGATGGTGATGCCCCTGCGCCGCCACCTGCGGCAGGTGGCGGCGCA                                                                                                                                                                                                         <  1:741130/207‑1                                     GGCCTTGCCGCTCACCACCATCTTGCGTGCATGGGCCAGGGATTCCTTGGTCAGGTCGATCCCGCCGAGCATCCGCGCCACTTCTTCCACGCGCTCACGCTTGCCAAGGCTAGCCACGGCGGTGTGGGTGGTGTCGCTGTTGCGCACCTTGTGCACGAACAGATGGTGATGCCCCTGCGCCGCCACCTGCGGCAGGTGG                                                                                                                                                                                                                <  1:266106/199‑1                                                                                    TGGTCAGGTCGATCCCGCCGAGCATCCGCGCCACTTCTTCCACGCGCTCACGCTTGCCAAGGCTAGCCACGGCGGTGTGGGTGGTGTCGCTGTTGCGCACCTTGTGCACGAACAGATGGTGATGCCCCTGCGCCGCCACCTGCGGCAGGTGGCGGCGCAGGGGCATCACCATCTGTTCGTGC                                                                                                                                                                                  <  1:456026/182‑1                                                                                    TGGTCAGGTCGATCCCGCCGAGCATCCGCGCCACTTCTTCCACGCGCTCACGCTTGCCAAGGCTAGCCACGGCGGTGTGGGTGGTGTCGCTGTTGCGCACCTTGTGCACGAACAGATGGTGATGCCCCTGCGCCGCCACCTGCGGCAGGTGGCGGCGCAGGGGCATCACCATCTGTTCGTGC                                                                                                                                                                                  >  2:456024/1‑182                                                                                                                                  CTCACGCTTGCCAAGGCTAGCCACGGCGGTGTGGGTGGTGTCGCTGTTGCGCACCTTGTGCACGAACAGATGGTGATGCCCCTGCGCCGCCACCTGCGGCAGGTGGCGGCGCAGGGGCATCACCATCTGTTCG                                                                                                                                                                                     >  1:683371/1‑133                                                                                                                                  CTCACGCTTGCCAAGGCTAGCCACGGCGGTGTGGGTGGTGTCGCTGTTGCGCACCTTGTGCACGAACAGATGGTGATGCCCCTGCGCCGCCACCTGCGGCAGGTGGCGGCGCAGGGGCATCACCATCTGTTCG                                                                                                                                                                                     <  2:683369/133‑1                                                                                                                                                                  GGGGGGTGTCGCTGTTGCGCACCTTGTGCACGAACAGATGGTGATGCCCCTGCGCCGCCACCTGCGGCcg                                                                                                                                                                                                                    >  2:176504/1‑68                                                                                                                                                                                                                                        GTGGCGGCGCAGGGGCATCACCATCTGTTCGTGCACAAGGTGCGCAACAGCGACACCACCCACACCGCCGTGGCTAGCCTTGGCAAGCGTGAGCGCGTGGAAGAAGTGGCGCGGATGCTCGGCGGGATCGACCTGACCAAGGAATCCCTGGCCCATGCACGCAAGATGGTGGTGAGCGGCAAGGCCTGAGCCTTGCTTTTCCAGGACGAT  >  1:712795/1‑210                                                                                                                                                                                                                                        GTGGCGGCGCAGGGGCATCACCATCTGTTCGTGCACAAGGTGCGCAACAGCGACACCACCCACACCGCCGTGGCTAGCCTTGGCAAGCGTGAGCGCGTGGAAGAAGTGGCGCGGATGCTCGGCGGGATCGACCTGACCAAGGAATCCCTGGCCCATGCACGCA                                                 <  1:151973/163‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTGTGCCCGCGAATCGTCCTGGAAAAGCAAGGCTCAGGCCTTGCCGCTCACCACCATCTTGCGTGCATGGGCCAGGGATTCCTTGGTCAGGTCGATCCCGCCGAGCATCCGCGCCACTTCTTCCACGCGCTCACGCTTGCCAAGGCTAGCCACGGCGGTGTGGGTGGTGTCGCTGTTGCGCACCTTGTGCACGAACAGATGGTGATGCCCCTGCGCCGCCACCTGCGGCAGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5380122‑5379888 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggtggCGGCGCAGGGGCATCACCATCTGTTCGTGCACAAGGTGCGCAACAGCGACACCACCCACACCGCCGTGGCTAGCCTTGGCAAGCGTGAGCGCGTGGAAGAAGTGGCGCGGATGCTCGGCGGGATCGACCTGACCAAGGAATCCCTGGCCCATGCACGCAAGATGGTGGTGAGCGGCAAGGCCTGAGCCTTGCTTTTCCAGGACGAT  >  AE015451/5379905‑5380110

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.