New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5527988 =	46 (1.050)	3 (0.070)	3/322	NT	6.5%	intergenic (+16/+34)	PP_4861/ydfG	conserved protein of unknown function/3‑hydroxy acid dehydrogenase, NADP‑dependent / malonic semialdehyde reductase
	?	AE015451	5528014 =	43 (1.050)					intergenic (+42/+8)	PP_4861/ydfG	conserved protein of unknown function/3‑hydroxy acid dehydrogenase, NADP‑dependent / malonic semialdehyde reductase

CCAGCCACAGGATATTGCCGAGACCATCTTCTGGATCCTCAACCAGCCGGCGCACATCAACATCAACAGCCTGGAACTGATGCCGGTGAGCCAGGACTGGGCAGGGTTCTCGATCGACCGATCAAAAGGCTAAGCATACGCCGCGAACCGGAAAGACCCGGTTCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5528154‑5527988 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggttcgcgGCGTATGCTTAGCCTTTTGATCGGTCGATCGAGAACCCTGCCCAGTCCTGGCTCACCGGCATCAGTTCCAGGCTGTTGATGTTGATGTGCGCCGGCTGGTTGAGGATCCAGAAGATGGTCTCGGCAATATCCTGTGGCTGGATCGGCTCCGCACCCGCGTAGGTAGCATCGTACTTGGCCTGGTCACCCCCGAAGCGCACCAGCGAGAACTCGCTCTC  >  AE015451/5528014‑5528231                                                                                                                                                                                                                                                                                                                                                                                                   CCAGCCACAGGATATTGCCGAGACCATCTTCAGGATCCTCAACCAGCCGGCGCACATCAACATCAACAGCCTGGAACTGATGCCGGTGAGCCAGGACTGGGCAGGGTTCTCGATCGACCGATCAAAAGGCTAAGCATACGCCGCGAACCGGAAAGACCCGGTTCG                                                                                                                                                                                                                              <  1:264125/165‑1        CAGGATATGTCCGAGACCATCTTCTGGATCATCAACCAGCCGGCGCACATCAACATCAACAGCCTGGAACTGATGCCGGTGAGCCAGGACTGGGCAGGGTTCTCGATCGACCGATCAAAAGGCTAAGCATACGCCGCGAACCGGAAAGACCCGGT                                                                                                                                                                                                                                 <  2:58664/155‑1                     AGACCATCTTCTGGATCCTCAACCAGCCGGCGCACATCAACATCAACAGCCTGGAACTGATGCCGGTGAGCCAGGACTGGGCAGGGTTCTCGATCGACCGATCAAAAGGCTAAGCATACGCCGCGAACCGGAAAGACCCGGct                                                                                                                                                                                                                                >  1:619988/1‑141                                                                   CAGCCTGGAACTGATGCCGGTGAGCCAGGACTGGGCAGGGTTCTCGATCGACCGATCAAAAGGCTAAGCATACGCCGCGAACCGGAAAGACCCGGTTCGCGGCGTATGCTTAGCCTTTTGATCGGTCGAT                                                                                                                                                                                               >  1:461529/1‑130                                                                   CAGCCTGGAACTGATGCCGGTGAGCCAGGACTGGGCAGGGTTCTCGATCGACCGATCAAAAGGCTAAGCATACGCCGCGAACCGGAAAGACCCGGTTCGCGGCGTATGCTTAGCCTTTTGATCGGTCGAT                                                                                                                                                                                               <  2:461527/130‑1                                                                                   CCGGTGAGCCAGGACTGGGCAGGGTTCTCGATCGACCGATCAAAAGGCTAAGCATACGCCGCGAACCGGAAAGACCCGGTTCGCGGCGTATGCTTAGCCTTTTGATCGGTCGATCGAGAACCCT                                                                                                                                                                                     <  2:447602/124‑1                                                                                        GAGCCAGGACTGGGCAGGGTTCTCGATCGACCGATCAAAAGGCTAAGCATACGCCGCGAACCGGAAAGACCCGGTTCGCG                                                                                                                                                                                                                            >  1:554409/1‑80                                                                                        GAGCCAGGACTGGGCAGGGTTCTCGATCGACCGATCAAAAGGCTAAGCATACGCCGCGAACCGGAAAGACCCGGTTCGCG                                                                                                                                                                                                                            <  2:554407/80‑1                                                                                                                                                              CCGGTTCGCGGCGTATGCTTAGCCTTTTGATCGGTCGATCGAGAACCCTGCCCAGTCCTGGCTCACCGGCATCAGTTCCAGGCTGTTGATGTTGATGTGCGCCGGCTGGTTGAGGATCCAGAAGATGGTCTCGGCAATATCCTGTGGCTGGATCGGCTCCGCACCCGCGTAGGTAGCATCGTACTTGGCCTGGTCACCCCCGAAGCGCACCAGCGAGAACTCGCTCTC  <  1:733536/228‑1                                                                                                                                                                GGTTCGCGGCGTATGCTTAGCCTTTTGATCGGTCGATCGAGAACCCTGCCCAGTCCTGGCTCACCGGCATCAGTTCCAGGCTGTTGATGTTGATCTGCGCCGGCTGGTTGA                                                                                                                     <  2:567860/111‑1                                                                                                                                                                  TTCGCGGCGTATGCTTAGCCTTTTGATCGGTCGATCGAGAACCCTGCCCAGTCCTGGCTCACCGGCATCAGTTCCAGGCTGTTGATGTTGATGTGCGCCGGCTGGTTGAGGATCCAGAAGATGGTCTCGGCAATATCCTGTGGCTGGATCGGCTCCGCACCCGCGTAGGTAGCATCGTACTTGGCCTGGTCACCCCCGCAGCGCACCAGCGAGA            >  1:173229/1‑214                                                                                                                                                                                                                                                                                                                                                                                                   CCAGCCACAGGATATTGCCGAGACCATCTTCTGGATCCTCAACCAGCCGGCGCACATCAACATCAACAGCCTGGAACTGATGCCGGTGAGCCAGGACTGGGCAGGGTTCTCGATCGACCGATCAAAAGGCTAAGCATACGCCGCGAACCGGAAAGACCCGGTTCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5528154‑5527988 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggttcgcgGCGTATGCTTAGCCTTTTGATCGGTCGATCGAGAACCCTGCCCAGTCCTGGCTCACCGGCATCAGTTCCAGGCTGTTGATGTTGATGTGCGCCGGCTGGTTGAGGATCCAGAAGATGGTCTCGGCAATATCCTGTGGCTGGATCGGCTCCGCACCCGCGTAGGTAGCATCGTACTTGGCCTGGTCACCCCCGAAGCGCACCAGCGAGAACTCGCTCTC  >  AE015451/5528014‑5528231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.