New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 564454347 (1.080)3 (0.070) 3/328 NT 6.2% intergenic (+24/‑105) yhiN/PP_4954 putative oxidoreductase with FAD/NAD(P)‑binding domain/conserved membrane protein of unknown function
?AE015451 = 5644559 46 (1.100)intergenic (+40/‑89) yhiN/PP_4954 putative oxidoreductase with FAD/NAD(P)‑binding domain/conserved membrane protein of unknown function

GTAGTACCGGCCGGCACCGAAGGCTACCGCACCGCCGAAGTGACCCTGGGCGGCGTGGATACCCGCGAGGTGTCGTCCAAGACCATGGAATCGCTGAAAAGCCCGGGGTTGTACTTCATCGGTGAAGTGCTGGATGTCACCGGCCACCTGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5644310‑5644543
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcacggGCCAGCAAGAAGCGTTCCGTGCTGCTGAAAGGATTCTACTCTACACGAACTGCGCGGCGGCGTTCGCCGATGCCCAAGCCCACTGGAAGTTGAAGCCGCCCAGGTGGCCGGTGACATCCAGCACTTCACCGATGAAGTACAACCCCGGGCTTTTCAGCGATTCCATGGTCTTGGACGACACCTCGCGGGTATCCACGCCGCCCAGGGTCACTTCGGCGGTGCGGTAGCCTTCG  <  AE015451/5644559‑5644327
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
GTAGTACCGGCCGGCACCGAAGGCTACCGCACCGCCGAAGTGACCCTGGGCGGCGTGGATACCCGCGAGGTGTCGTCCAAGACCATGGAATCGCTGAAAAGCCCGGGGTTGTACTTCATCGGTGAAGTGCTGGATGTCACCGGCCACCTGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCAC                                                                                                                                                                                                                                             <  2:690415/232‑1
                CCGAAGGCTACCGCACCGCCGAAGTGACCCTGGGCGGCGTGGATACCCGCGAGGTGTCGTCCAAGACCATGGAATCGCTGAAAAGCCCGGGGTTGTACTTCATCGGTGAAGTGCTGGATGTCACCGGCCACCTGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACG                                                                                                                                                                                                                                            <  2:287163/217‑1
                                                                                             CTGAAAAGCCCGGGGTTGTACTGCATCGGTGAAGTGCTGGTTGTCACCGGCCACCTGGGCGGCTTCAACTTCCATTGGGCTTGGGCATCGGCGAACGCCGCGGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCAC                                                                                                                                                                                                                                             >  2:346677/1‑139
                                                                                               GAAAAGCCCGGGGTTGTACTTCATCGGTGAAGTGCTGGATGTCACCGGCCACCTGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGGCCAGCAAGAAGCGTTCCGTGCTGCTG                                                                                                                                                                                                                <  2:545365/166‑1
                                                                                                                                            CGGCCACCTGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGGCCAGCAAGAAGCGTTCCGTGCTGCT                                                                                                                                                                                                                 <  1:75815/120‑1
                                                                                                                                            CGGCCACCTGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGGCCAGCAAGAAGCGTTCCGTGCTGCT                                                                                                                                                                                                                 >  2:75814/1‑120
                                                                                                                                                                                                                                     CACGGGCCAGCAAGAAGCGTTCCGTGCTGCTGAAAGGATTCTACGCTACACGAACTGCGCGGC                                                                                                                                                                                 >  2:135820/1‑63
                                                                                                                                                                                                                                        GGGCCAGCAAGAAGCGTTCCGTGCTGCTGAAAGGATTCTACTCTACACGAACTGCGCGGCGGCGTTCGCCGATGCCCAAGCCCACTGGAAGTTGAAGCCGCCCAGGTGGCCGGTGACATCCAGCACTTCACCGATGAAGTACAACCCCGGGCTTTTCAGCGATTCCATGGTCTTGGACGACACCTCGCGGGTATCCACGCCGCCCAGGGTCACTTCGGCGGTGCGGTAGCCTTCG  <  1:631197/235‑1
                                                                                                                                                                                                                                        GGGCCAGCAAGAAGCGTTCCGTGCTGCTGAAAGGATTCTACTCTACACGAACTGCGCGGCGGCGTTCGCCGATGCCCAAGCCCACTGGAAGTTGAAGCCGCCCAGGTGGCCGGTGACATCCAGCACTTCACCGATGAAGTACAACCCCGGGCTTTTCAGCGATTCCATGGTCTTGGACGACACCTCGCGGGTATCCACGCCGCCCAGGGTCACTTCGGCGGTGCGGTAGCCTTCG  <  1:756239/235‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
GTAGTACCGGCCGGCACCGAAGGCTACCGCACCGCCGAAGTGACCCTGGGCGGCGTGGATACCCGCGAGGTGTCGTCCAAGACCATGGAATCGCTGAAAAGCCCGGGGTTGTACTTCATCGGTGAAGTGCTGGATGTCACCGGCCACCTGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5644310‑5644543
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcacggGCCAGCAAGAAGCGTTCCGTGCTGCTGAAAGGATTCTACTCTACACGAACTGCGCGGCGGCGTTCGCCGATGCCCAAGCCCACTGGAAGTTGAAGCCGCCCAGGTGGCCGGTGACATCCAGCACTTCACCGATGAAGTACAACCCCGGGCTTTTCAGCGATTCCATGGTCTTGGACGACACCTCGCGGGTATCCACGCCGCCCAGGGTCACTTCGGCGGTGCGGTAGCCTTCG  <  AE015451/5644559‑5644327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.