New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 313870	45 (1.030)	5 (0.130)	5/302	NT	11.5%	intergenic (+43/+8)	ygaU/yrfG	regulator of murein cross‑linking/purine nucleotidase
	?	AE015451	= 313850	37 (0.960)					intergenic (+23/+28)	ygaU/yrfG	regulator of murein cross‑linking/purine nucleotidase

CGGGCCGGTAGTCCAGGCGGCAAGGTTCGTCACAGTGAAATCGGGCGACACACTTTCAGCCATTGCCATGGTCGTGTATGGCAATGCCAATCAGTACAACAAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAGTGCCCCACACCAAACCGCCGTGCACTGCGCAGAATCGCCAGCGTGTCATCGATGAACAGGCTGCGTTCCGGTTCGAAGCCGATATCCGCCTGCAGGGCATCCCAA  >  AE015451/313647‑314082                                                                                                                                                                                                                                |                                                                                                                                                                                                                     cGGGCCGGTAGTCCAGGCGGCAAGGTTCGTCACAGTGAAATCGGGCGACACACTTTCAGCCATTGCCATGGTCGTGTATGGCAATGCCAATCAGTACAACAAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATg                                                                                                                                                                                                                    <  1:219046/226‑1 (MQ=255)         tAGTCCAGGCGGCAAGGTTCGTCACAGTGAAATCGGGCGACACACTTTCAGCCATTGCCATGGTCGTGTATGGCAATGCCAATCAGTACAACAAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGc                                                                                                                                                                                                                <  1:406010/222‑1 (MQ=255)           gTCCAGGCGGCAAGGTTCGTCACAGTGAAATCGGGCGACACACTTTCAGCCATTGCCATGGTCGTGTATGGCAATGCCAATCAGTACAACAAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCtt                                                                                                                                                                                                             >  1:753573/1‑223 (MQ=255)           gTCCAGGCGGCAAGGTTCGTCACAGTGAAATCGGGCGACACACTTTCAGCCATTGCCATGGTCGTGTATGGCAATGCCAATCAGTACAACAAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCtt                                                                                                                                                                                                             <  2:753571/223‑1 (MQ=255)              cAGGCGGCAAGGTGCGTCACAGTGAAATCGGGCGACACACTTTCAGCCATTGCCATGGTCGTGTATGGCAATGCCAATCAGTACAACAAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAgg                                                                                                                                                                                                        <  1:158618/225‑1 (MQ=255)               aGGCGGCAAGGTTCGTCACAGTGAAATCGGGCGACACACTTTCAGCCATTGCCATGGTCGTGTATGGCAATGCCAATCAGTACAACAAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACa                                                                                                                                                                                                          <  1:301864/222‑1 (MQ=255)                     cAAGGTCCGTCACAGTGAAATCGGGCGACACACTTTCAGCCATTGCCATGGTCGTGTATGGCAATGCCAATCAGTACAACAAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAAt                                                                                                                                                                                                                     <  2:561885/205‑1 (MQ=255)                                   gTGAAATCGGGCGACACACTTTCAGCCATTGCCATGGTCGTGTATGGCAATGCCAATCAGTACAACAAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATg                                                                                                                                                                                                                    <  2:766053/192‑1 (MQ=255)                                              cGACACACTTTCAGCCATTGCCATGGTCGTGTATGGCAATGCCAATCAGTACAACAAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAAgaggcctgtacagacttcagcgatcagtcaggaatacgcagcacctgccccggatag                                                                                                                                                             <  1:109908‑M1/236‑58 (MQ=255)                                               gACACACTTTCAGCCATTGCCATGGTCGTGTATGGCAATGCCAATCAGTACAACAAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGcc                                                                                                                                                                                                      >  1:334982/1‑194 (MQ=255)                                                          aGCCATTGCCATGGACGTGTATGGCAAGGCCAATCAGTACAACAAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCcg                                                                                                                                                   <  1:420083/234‑1 (MQ=255)                                                                 tccATGGTCGTGTATGGCAATGCCAATCAGTACCACAAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCt                                                                                                                                                                                                              <  2:9238/167‑1 (MQ=255)                                                                 gCCATGGTCGTGTATGGCAATGCCAATCAGTACAACAAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATcc                                                                                                                                                     >  1:188204/1‑225 (MQ=255)                                                                        tCGTGTATGGCAATGCCAATCAGTACAACAAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATg                                                                                                                                                                                                                    <  2:805148/155‑1 (MQ=255)                                                                        tCGTGTATGGCAATGCCAATCAGTACAACAAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGc                                                                                                                                     <  1:463825/234‑1 (MQ=255)                                                                             tATGGCAATGCCAATCAGTACAACAAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCt                                                                                                                                         >  2:321596/1‑225 (MQ=255)                                                                               tGGCAATGCCAATCAGTACAACAAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATTGGGCCt                                                                                                                                                                                                              >  2:512610/1‑154 (MQ=255)                                                                                     tGCCAATCAGTACAACAAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAg                                                                                                                                                          >  1:193424/1‑200 (MQ=255)                                                                                        cAATCAGTACAACAAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGCCCGCCGCAAACTCTTCAGTATCCCGCGGcc                                                                                                                                              >  1:27286/1‑209 (MQ=255)                                                                                                acaacaAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATc                                                                                                                                                      <  1:374509/193‑1 (MQ=255)                                                                                                  aacaaGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAGt                                                                                                          <  1:406009/235‑1 (MQ=255)                                                                                                  aacaaGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCCACCGCCGCaaa                                                                                                                                                                  >  2:71780/1‑179 (MQ=255)                                                                                                   acaaGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAGTGc                                                                                                        >  1:524740/1‑236 (MQ=255)                                                                                                           ttCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAGTGCCCCACAcc                                                                                                <  1:321598/236‑1 (MQ=255)                                                                                                            tCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAGTGCCCCacac                                                                                                 >  1:300643/1‑234 (MQ=255)                                                                                                            tCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGGAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCgg                                                                                                                                                >  1:112166/1‑187 (MQ=255)                                                                                                                 gCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAGTGCCCCACACCAAAcc                                                                                           <  1:568182/235‑1 (MQ=255)                                                                                                                                              cAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCaa                                                                                                            >  1:206191/1‑189 (MQ=255)                                                                                                                                                    cTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAGTGCCCCACAcc                                                                                                <  1:12558/195‑1 (MQ=255)                                                                                                                                                      aTCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAAgaggcctgtacagacttcagcgatcagtcaggaatacgcagcacc                                                                                                                                                                         >  2:198360‑M1/1‑75 (MQ=255)                                                                                                                                                      aTCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAGTGCCCCACACCAAACCGCCGTGCACTgcg                                                                              >  1:735868/1‑211 (MQ=255)                                                                                                                                                       tCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCAcc                                                                                                                    <  1:484450/172‑1 (MQ=255)                                                                                                                                                          ggggCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCa                                                                                                                                                                                                 >  2:762293/1‑92 (MQ=255)                                                                                                                                                          ggggCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAGTGCCCCACACCAAACCGCCGTGCACTGCGCAGAATCGCCa                                                                   >  1:613147/1‑218 (MQ=255)                                                                                                                                                               aGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAAgaggcctgt                                                                                                                                                                                                             >  1:180914‑M1/1‑66 (MQ=255)                                                                                                                                                               aGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAGTGCCCCACACCAAACCGCCGTGCACTGCGCaaa                                                                          >  1:27533/1‑204 (MQ=255)                                                                                                                                                                         tATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAAgaggcctgtacagacttcagcgatcagtcaggaatacgcagcacctgccccggatagatcttgtccgggtgtttgagcatcggcttgttggcctcgaaaatcttgttgtactgattggcattgccatacac                                                                                   >  2:700992‑M1/1‑56 (MQ=255)                                                                                                                                                                              ctgactgaTCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAg                                                                                                           >  1:172142/1‑158 (MQ=255)                                                                                                                                                                               tgactgaTCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAGTGCCCCCCACCCAACCGCCGTGCACTGCGCAgc                                                                          >  2:152102/1‑189 (MQ=255)                                                                                                                                                                                      tCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACGGGCCTACCAGTAACTCCCGGTAATCCTCGAccgcc                                                                                                                                                                       <  2:193422/90‑1 (MQ=255)                                                                                                                                                                                        gCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAGTGCCCCACACCAAACCGCCGTGCACTgcg                                                                              >  2:113920/1‑177 (MQ=255)                                                                                                                                                                                        gCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAGTGCCCCACACCAAACCGCCGTGCACTGCGCAGAATCGCCAGCGTGTCATCGATGAACAGGCTGCGTTCCGGTTCGAAGCCGATATCCg                   >  1:479324/1‑236 (MQ=255)                                                                                                                                                                                        gCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAGTGCCCCACACCAAACCGCCGGGCACTGCGCAg                                                                           >  1:523668/1‑180 (MQ=255)                                                                                                                                                                                         cTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAAgaggcctgtacagacttcagcgatcagtcaggaatacgcagcacctgccccggatagatcttgtccgggtgtttgagcatcggcttgttggcctcgaaaatcttgttgtactgattggcattgccatacacgaccatggcaa                                                                        >  1:282365‑M1/1‑40 (MQ=255)                                                                                                                                                                                         cTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAGTGCCCCACACCAAACCGCCGTGCACTGCGCAg                                                                           >  2:713792/1‑179 (MQ=255)                                                                                                                                                                                              gTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAGTGCCCCACACCAAACCGCCGTGCACTGCGCAGAATCGCCAGCGTGTCATCGATGAACAGGCTGCGTTCCGGTTCGAAGCCGATATCCGCCTGCa             <  1:478679/236‑1 (MQ=255)                                                                                                                                                                                                              tCGCGGGCGCGCCCGCGAAgaggcctgtacagacttcagcgatcagtcaggaatacgcagcacctgccccggatagatcttgtccgggtgtttgagcatcggcttgttggcctcgaaaatcttgatgtactgattggcaa                                                                                             >  2:39211‑M1/1‑19 (MQ=255)                                                                                                                                                                                                               cgcgGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTcc                                                                                                                                                                                         <  1:260052/47‑1 (MQ=255)                                                                                                                                                                                                                gcgGGCGCGCCCGCGAAgaggcctgtacagacttcagcgatcagtcaggaatacgcagcacctgccccggatagatcttgtccgggtgtttgagcatcggcttgttggcctcgaaaatc                                                                                                                >  1:375343‑M1/1‑17 (MQ=255)                                                                                                                                                                                                                gcgGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGc                                                                                                                             >  2:223638/1‑106 (MQ=255)                                                                                                                                                                                                                gcgGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGGAACTCCCGGTAATCCTCGAcc                                                                                                                                                                          >  2:602698/1‑61 (MQ=255)                                                                                                                                                                                                                      gcgcCCGCGAAgaggcctgtacaggcttcagcgatccgtcaggaatacgcagcacctgccccggatagatcttgtccgggtgtttgagcatcggcttgttggcctcgaaaatcttgttgtactgattggca                                                                                              <  2:633593‑M1/131‑121 (MQ=255)                                                                                                                                                                                                                        gcCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAGTGcc                                                                                                       <  2:301208/120‑1 (MQ=255)                                                                                                                                                                                                                        gcCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAGTGCCCCACACCAAACCGCCGTGCACTGCGCAGAATCGCCAGCGTGTCATCGATGAACAGGCTGCGTTCCGGTTCGACGCCGATATCCGCCTGCAGGGCATCCCaa  >  1:704214/1‑221 (MQ=255)                                                                                                                                                                                                                          ccGCGCAgaggcctgtacagacttcagcgatcagtcaggaatacgcagcacctgccccggatagatcttgtccgggtgtttgagcatcggcttgttggcctcgaaaatcttgttgtactgattggcattgccatacacgaccatggcaatggctgaaagtgtgtcgcccgatttcactgtg                                        >  2:747233‑M1/1‑7 (MQ=255)                                                                                                                                                                                                                          ccGCGAAgaggcctgtacagacttcagcgatcagtcaggaatacgcagcacctgccccggatagatcttgtccgggtgtttgagcatcggcttgttggcctcgaaaatcttgttgtactgattggcattgccatacacgaccatggcaatggctgaaagtgtgtcgcccgatttcactgtgacgaaccttgccgcc                         >  1:271478‑M1/1‑7 (MQ=255)                                                                                                                                                                                                                          ccGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAGTGCCCCACACCAAACCGCCGTGCACTGCGCAGAATCGCCAGCGTGTCATCGATGAACAg                                                >  2:537053/1‑173 (MQ=255)                                                                                                                                                                                                                          ccGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAGTGCCCCACACCAAACCGCCGTGCACTGCGCAGAATCGCCAGCGTGTCATCGATGAACAg                                                <  1:537055/173‑1 (MQ=255)                                                                                                                                                                                                                          ccGCGAAGGGGGCTTTACAGCCCTACCAGTACCCCCCGGTAATCCTCGCCCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGgc                                                                                                                         <  2:206189/100‑1 (MQ=255)                                                                                                                                                                                                                           cgcgAAgaggcctgtacagacttcagcgatcagtcaggaatacgcagcacctgccccggatagatcttgtccgggtgtttgagcatcggcttgttggcctcgaaaatc                                                                                                                <  2:649033‑M1/108‑103 (MQ=255)                                                                                                                                                                                                                                |                                                                                                                                                                                                                     CGGGCCGGTAGTCCAGGCGGCAAGGTTCGTCACAGTGAAATCGGGCGACACACTTTCAGCCATTGCCATGGTCGTGTATGGCAATGCCAATCAGTACAACAAGATTTTCGAGGCCAACAAGCCGATGCTCAAACACCCGGACAAGATCTATCCGGGGCAGGTGCTGCGTATTCCTGACTGATCGCTGAAGTCTGTACAGGCCTCTTCGCGGGCGCGCCCGCGAATGGGGCCTTACAGGCCTACCAGTAACTCCCGGTAATCCTCGACCGCCGCAAACTCTTCAGTATCCCGCGGCCCTGCTTTGCTATCCGGCTGGCGCACCGCCAGCAAGTGCCCCACACCAAACCGCCGTGCACTGCGCAGAATCGCCAGCGTGTCATCGATGAACAGGCTGCGTTCCGGTTCGAAGCCGATATCCGCCTGCAGGGCATCCCAA  >  AE015451/313647‑314082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.