New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2033404 =	10 (0.230)	3 (0.070)	3/334	NT	23.5%	coding (885/1665 nt)	pgi‑I	glucose‑6‑phosphate isomerase
	?	AE015451	2033445 =	NA (NA)					coding (926/1665 nt)	pgi‑I	glucose‑6‑phosphate isomerase

AAACGCCATGGCCGCGCGGACCTGGTACCTGGCCCAAGGCGGCTCGGAAGCCGAGCTGTACCGCCACTTCATTGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCGATGTGGGACTGGGTGGGTGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTGCCGTACGACCACTACCTGCGCAACATCACCAAGCACCTGCAGCAGCTGGACATGGA  >  AE015451/2033182‑2033595                                                                                                                                                                                                                               |                                                                                                                                                                                                cgccccagatcaccggcccggtgtcggtcttcaccggggtaccgtcttgcagcacgctcttgccgttggattccatgtccagctgctgcaggtgcttggtgatgttgcgcaggtagtggtcgtacggcaggatcgcgtggctgtttgcgtcccagaagttgccataccacacgcccagcagggccagtagcaccggcatgttcttgtcgaacggtgcggtctGGAACTGCTGTcc                                                                                                                                                                                     >  1:503570‑M1/223‑235 (MQ=255)                                   cggggtaccgtcttgcagcacgctcttgccggtggattccatgtccagctgctgcaggtgcttggtgatgttgcgcaggtagtggtcgtacggcaggatcgcgtggctgtttgcgtcccagaagttgccataccacacgcccagcagggccagtagcaccggcatgttcttgtcgaacggtgcggtctGGAActgctg                                                                                                                                                                                        >  1:43503‑M1/189‑198 (MQ=255)                                     gggtaccgtcttgcagcacgctcttgccgttggattccatgtccagctgctgcaggtgcttggtgatgttgcgcaggtagtggtcgtacggcaggatcgcgtggctgtttgcgtcccagaagttgccataccacacgcccagcagggccagtagcaccggcatgttcttgtcgaacggtgcggtctGGaa                                                                                                                                                                                              >  2:648766‑M1/187‑190 (MQ=255)                                                               ccgttggattccatggccagctgctgcaggtgcttggtgaggttgcgcgggtagtggtcgtacggcaggatcgcgtggctgtttgcgtcccagaagttgccataccacacgcccagcagggccagtagcaccggcatgttcttgtcgaacggtgcggtctGGAAct                                                                                                                                                                                            >  2:98781‑M1/161‑166 (MQ=255)                                                                                 ccAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCGATGTGGGACTGGGTGGGTGGGCGCTACTCGCTGGGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCCCTGCCAACTTCAAGGAACTGCTGTCCGGTGCCTACACCCTGGACCAGCACTTCCAGAccac                                                                                                                                                  >  1:203935/1‑188 (MQ=255)                                                                                                                   ccGCGAAGAAAACATCTTCCCGATGTGGGACTGGGTGGGTGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGc                                                                                                       >  2:428751/1‑199 (MQ=35)                                                                                                                                                                                        agtGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTTGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTGCCGTACGACCACTAcc                                          >  2:93163/3‑191 (MQ=14)                                                                                                                                                                                         cagtagcaccggcatgttcttgtcgaacggtgcggtctGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTgg                                                                                                                  <  2:517431‑M1/80‑1 (MQ=255)                                                                                                                                                                                          tGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGGGCTACTCGCCCCGCTGGGCGGGTGGGATGGCAACTTCTGGGACGCAAACAGCCAcgcg                                                                >  2:136945/1‑167 (MQ=255)                                                                                                                                                                                             cGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAAc                                                                         <  1:739171/155‑1 (MQ=31)                                                                                                                                                                                             cGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAAc                                                                         >  2:739169/1‑155 (MQ=31)                                                                                                                                                                                                       ggCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTGCCGTACGACCACTACCTGCGCAACATCACCAAGCACCTGCAGCAGCTGGACATgg   >  1:33796/1‑215 (MQ=31)                                                                                                                                                                                                                cACTGCCAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGcc                                                                     <  1:505349/140‑1 (MQ=33)                                                                                                                                                                                                                cACTGCCAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGcc                                                                     >  2:505347/1‑140 (MQ=33)                                                                                                                                                                                                                     ccAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTGCCGTACGACCACTACCTGCGCAACATCACCAAGCACCTGCAGCAGCTGGACATGGa  >  2:546410/1‑202 (MQ=31)                                                                                                                                                                                                                               |                                                                                                                                                                                                AAACGCCATGGCCGCGCGGACCTGGTACCTGGCCCAAGGCGGCTCGGAAGCCGAGCTGTACCGCCACTTCATTGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCGATGTGGGACTGGGTGGGTGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTGCCGTACGACCACTACCTGCGCAACATCACCAAGCACCTGCAGCAGCTGGACATGGA  >  AE015451/2033182‑2033595

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.