New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4980231 =	33 (0.760)	3 (0.070)	3/322	NT	8.6%	intergenic (‑22/+139)	flgF/PP_4387	flagellar basal‑body rod protein FlgF/conserved exported protein of unknown function
	?	AE015451	4980313 =	33 (0.800)					intergenic (‑104/+57)	flgF/PP_4387	flagellar basal‑body rod protein FlgF/conserved exported protein of unknown function

CACTGAAGTCGGTGGCCGGGCGCTCGGTCATGGCGAATGCACGCGCCGGAAAGCTGTCACCGAACACCGGCATCGAGCGGGCCTGCTCCAGGTCGCGCTGAAAACCGTTGGTGGAAATGTTCGCCAGGTTGTTGGCGTGGGCCTTCTGCGCCAGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAG  >  AE015451/4980008‑4980454                                                                                                                                                                                                                                |                                                                                                                                                                                                                                cACTGAAGTCGGTGGCCGGGCGCTCGGTCATGGCGAATGCACGCGCCGGAAAGCTGTCACCGAACACCGGCATCGAGCGGGCCTGCTCCAGGTCGCGCTGAAAACCGTTGGTGGAAATGTTCGCCAGGTTGTTGGCGTGGGCCTTCTGCGCCAGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTg                                                                                                                                                                                                                        <  2:410564/233‑1 (MQ=255)         tCGGTGGCCGGGCGCTCGGTCATGGCGAATGCACGCGCCGGAAAGCTGTCACCGAACACCGGCATCGAGCGGGCCTGCTCCAGGTCGCGCTGAAAACCGTTGGTGGAAATGTTCGCCAGGTTGTTGGCGTGGGCCTTCTGCGCCAGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTg                                                                                                                                                                                                                  <  1:794872/231‑1 (MQ=255)               gCCGGGCGCTCGGTCATGGCGAATGCACGCGCCGGAAAGCTGTCACCGAACACCGGCATCGAGCGGGCCTGCTCCAGGTCGCGCTGAAAACCGTTGGTGGAAATGTTCGCCAGGTTGTTGGCGTGGGCCTTCTGCGCCAGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCa                                                                                                                                                                                                       <  1:498871/236‑1 (MQ=255)                           gTCATGGCGAATGCACGCGCCGGAAAGCTGTCACCGAACACCGGCATCGAGCGGGCCTGCTCCAGGTCGCGCTGAAAACCGTTGGTGGAAATGTTCGCCAGGTTGTTGGCGTGGGCCTTCTGCGCCAGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGa                                                                                                                                                                                           <  1:119851/236‑1 (MQ=255)                            tCATGGCGAATGCACGCGCCGGAAAGCTGTCACCGAACACCGGCATCGAGCGGGCCTGCTCCAGGTCGCGCTGAAAACCGTTGGTGGAAATGTTCGCCAGGTTGTTGGCGTGGGCCTTCTGCGCCAGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTg                                                                                                                                                                                            <  1:665910/234‑1 (MQ=255)                               ccccgctgcccccgccccgttctatcaatggcaaagcctggtcaccggccgctacctgtgttcggcccacaacccgggcaaaggctgggtgcgccactctggcccctacaacaacgccgcctgccgcgcccattgagcaagcccttgccgcaggcggcaaacatccgccgacaaactgacggttattgcccctTGCCGCGCTg                                                                                                                                                                                                                        >  2:565533‑M1/194‑203 (MQ=255)                                                         tCACCGAACACCGGCATCGAGCGGGCCTGCTCCAGGTCGCGCTGAAAACCGTTGGTGGAAATGTTCGCCAGGTTGTTGGCGTGGGCCTTCTGCGCCAGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCcg                                                                                                                                                                                                                             <  2:470783/172‑1 (MQ=255)                                                                aagcctggtcaccggccgctacctgtgttcggcccacaacccgggcaaaggctgggtgcgccactctggcccctacaacaacgccgcctgccgcgcccattgagcaagcccttgccgcaggcggcaaacatccgccgacaaactgacggttattgcccctTGCcgcg                                                                                                                                                                                                                           <  2:573963‑M1/7‑1 (MQ=255)                                                                    ctggtcaccggccgctacctgtgttcggcccacaacccgggcaaaggctgggtgcgccactctggcccctacaacaacgccgcctgccgcgcccattgagcaagcccttgccgcaggcggcaaacatccgccgacaaactgacggttattgcccctTGCcgcg                                                                                                                                                                                                                           <  1:463931‑M1/7‑1 (MQ=255)                                                                            aGCGGGCCTGCTCGAGGTCGCGCTGAAAACCGTTGGTGGAAATGTTCGCCAGGTTGTTGGCGTGGGCCTTCTGCGCCAGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCaa                                                                                                                                                                                                      <  1:771260/176‑1 (MQ=255)                                                                              cGGGCCTGGTCCAGGTCGCGCTGAAAACCGTTGGTGGAAATGTTCGCCAGGTTGTTGGCGTGGGCCTTCTGCGCCAGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCa                                                                                                                                                                                                       <  2:173904/173‑1 (MQ=255)                                                                               ccgctacctgtgttcggcccacaacccgggcaaaggctgggtgcgccactctggcccctacaacaacgccgcctgccgcgcccattgagcaagcccttgccgcaggcggcaaacatccgccgacaaactgacggttattgcccctTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAaca                                                                                                                                                                            >  2:437774‑M1/146‑199 (MQ=255)                                                                               ccgctacctgtgttcggcccacaacccgggcaaaggctgggtgcgccactctgacccctacaacaacgccgcctgccgcgcccattgagcaagcccttgccgcaggcggcaaacatccgccgacaaactgacggttattgcccctTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAaca                                                                                                                                                                            <  1:437776‑M1/54‑1 (MQ=255)                                                                                                   tGAAAACCGTTGGTGGAAATGTTCGCCAGGTTGTTGGCGTGGGCCTTCTGCGCCAGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCaataa                                                                                                                                                                                               >  2:44328/1‑160 (MQ=255)                                                                                                        aCCGTTGGTGGAAATGTTCGCCAGGTTGTTGGCGTGGGCCTTCTGCGCCGGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACggg                                                                                                                                                               <  1:590666/187‑1 (MQ=255)                                                                                                          cGTTGGTGGAAATGTTCGCCAGGTTGTTGGCGTGGGCCTTCTGCGCCAGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGcgcg                                                                                                                                                   <  1:765210/197‑1 (MQ=255)                                                                                                            ttGGTGGAAATGTTCGCCAGGTTGTTGGCGTGGGCCTTCTGCGCCAGCGCGTTCTGGCTGGCGTCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGt                                                                                                                                                                                                                       <  2:500228/127‑1 (MQ=255)                                                                                                                        ttCGCCAGGTTGTTGGCGTGGGCCTTCTGCGCCAGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAg                                                                                              >  1:332954/1‑236 (MQ=255)                                                                                                                          cGCCAGGTTGTTGGCGTGGGCCTTCTGCGCCAGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTgccg                                                                                                         <  2:773259/223‑1 (MQ=255)                                                                                                                          cGCCAGGTTGTTGGCGTGGGCCTTCTGCGCCAGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCaa                                                                                               <  2:562920/233‑1 (MQ=255)                                                                                                                           gCCAGGTTGTTGGCGTGGGCCTTCTGCGCCAGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTgcc                                                                                                          <  1:688914/221‑1 (MQ=255)                                                                                                                             cAGGTTGTTGGCGTGGGCCTTCTGCGCCAGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAggg                                                                                                                                            >  2:425038/1‑185 (MQ=255)                                                                                                                                             gCCTTCTGCGCCAGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACCCCCg                                                                                                                                                                        >  2:57088/1‑141 (MQ=255)                                                                                                                                             gCCTTCTGCGCCAGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGcgcg                                                                           >  2:684028/1‑234 (MQ=255)                                                                                                                                              ccTTCTGCGCCAGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCgg                                                                          >  2:466189/1‑234 (MQ=255)                                                                                                                                                  cTGCGCCCGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAggcg                                                                    <  1:123217/236‑1 (MQ=255)                                                                                                                                                           cgcgTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCgttgtt                                                            >  1:709566/1‑235 (MQ=255)                                                                                                                                                              gTTCTGGCTGGCGCCGGTCATGGCCACATAACGCAACTTGTCCACACTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGaaa                                                                                                                                                                              <  2:302586/118‑1 (MQ=255)                                                                                                                                                                    gctggcGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGcc                                                   <  1:547853/235‑1 (MQ=255)                                                                                                                                                                        caagcccttgccgcaggcggcaaacatccgccgacaaactgacggttattgcccctTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAg                                                                                                                                              >  1:573965‑M1/57‑140 (MQ=255)                                                                                                                                                                           ccGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCACGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATg                                                                                 >  2:786085/1‑198 (MQ=255)                                                                                                                                                                               tCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCg                                                                                                   <  1:626212/176‑1 (MQ=255)                                                                                                                                                                                            aaGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTTACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCAccc                                     <  2:273655/225‑1 (MQ=255)                                                                                                                                                                                                        cacaGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCgttgtt                                                            <  2:709564/190‑1 (MQ=255)                                                                                                                                                                                                        cacaGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCCGAGTGGCGCACCCa                                    >  1:368438/1‑214 (MQ=255)                                                                                                                                                                                                                    tctGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAg  <  1:466191/236‑1 (MQ=255)                                                                                                                                                                                                                        cgcgTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCgttgt                                                             <  2:471274/173‑1 (MQ=255)                                                                                                                                                                                                                          cgTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCaa                                                                                               >  1:671174/1‑137 (MQ=255)                                                                                                                                                                                                                          cgTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCaa                                                                                               <  2:671172/137‑1 (MQ=255)                                                                                                                                                                                                                          cgTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAgg                                                       >  2:492363/1‑177 (MQ=255)                                                                                                                                                                                                                           gTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTc                                                                                                                                                                                   <  2:392688/52‑1 (MQ=255)                                                                                                                                                                                                                               cTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCa                                        <  1:660761/187‑1 (MQ=255)                                                                                                                                                                                                                                TGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGc               <  2:635642‑M1/211‑1 (MQ=255)                                                                                                                                                                                                                                |                                                                                                                                                                                                                                CACTGAAGTCGGTGGCCGGGCGCTCGGTCATGGCGAATGCACGCGCCGGAAAGCTGTCACCGAACACCGGCATCGAGCGGGCCTGCTCCAGGTCGCGCTGAAAACCGTTGGTGGAAATGTTCGCCAGGTTGTTGGCGTGGGCCTTCTGCGCCAGCGCGTTCTGGCTGGCGCCGGTCATGGCCACATAAAGCAACTTGTCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAG  >  AE015451/4980008‑4980454

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.