Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	5816928	5817231	304	12 [11]	[11] 12	[pilT]	[pilT]

CCTACGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTCTTC  >  AE015451/5817124‑5817467                                                                                                             |                                                                                                                                                                                                                                            ccTACGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGaa                                                                                                                                                               >  1:435199/1‑187 (MQ=255)            gACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTcgcg                                                                                                                                               >  1:764314/1‑192 (MQ=255)            gACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCg                                                                                                                                     >  1:411654/1‑202 (MQ=255)            gACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGgcgcagcgca                                                                                                    >  1:231837/1‑235 (MQ=255)                     cTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGcc                                                                                          >  1:726714/1‑236 (MQ=255)                          cgACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGCGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGAt                                                                                                                             >  2:178990/1‑196 (MQ=255)                               accaGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGgcgc                                                                                                          >  2:549838/1‑210 (MQ=255)                                               ccagcAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGCTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGgcgc                                                                >  1:104211/5‑236 (MQ=255)                                                                           ttCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCAt                                                                                                                                <  2:435197/144‑1 (MQ=255)                                                                                                caccaACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGgatgat                 >  2:677959/1‑234 (MQ=255)                                                                                                  ccaACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGgcgcagcg                                                                                                      >  2:784038/1‑147 (MQ=255)                                                                                                             aTGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTCTTc  >  1:720625/1‑236 (MQ=255)                                                                                                             |                                                                                                                                                                                                                                            CCTACGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTCTTC  >  AE015451/5817124‑5817467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑