New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	617541 =	57 (2.210)	3 (0.120)	3/304	NT	5.2%	coding (869/981 nt)	PP_0531	hypothetical protein
	?	AE015451	617572 =	54 (2.190)					coding (900/981 nt)	PP_0531	hypothetical protein

AGGCAGCTGCGACATCAGCTTCTGAGCCTGGCCGAGGGTTTTGCAATTGAGTTCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/617599‑617541 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggccaGGCTCAGAAGCTGATGTCGCAGCTGCCTGTGGATGTCTACCGCGAGCTGTGCCTGTACGTGCTCAAGTACGCGCAACCTTGAGTCGGACAGGGGCAGGGCTGATCACTGGCCAGACATGCCTTCGATCACCCTGCGCAGGGAGGCGCCCAGCATGGGCCCATGCCCCAGACCCTCGAAGCGCTCAAAGCGCACGTCGAGGCCTTTGATCGCGGCCAGATCTGCCGCCAGTTGG  >  AE015451/617572‑617804                                                                                                                                                                                                                                                                                                      AGGCAGCTGCGACACCAGCTTCTGAGCCTGGCCGAGGGTTTTGCAATGGAGTTCGGCCAGGCTCAGAAGCTGATGTCGCAGCTGCCTGTGGATGTCTACCGCG                                                                                                                                                                                               <  2:98031/103‑1                            CTGGCCGAGGGTTTTGCAATTGAGTTCGGCCAGGCTCAGAAGCTGATGTCGCAGCTGCCTGTGGATGTCTACCGCGAGCTGTGCCTGTACGTGCTCAAGTAC                                                                                                                                                                     <  1:280327/102‑1                            CTGGCCGAGGGTTTTGCAATTGAGTTCGGCCAGGCTCAGAAGCTGATGTCGCAGCTGCCTGTGGATGTCTACCGCGAGCTGTGCCTGTACGTGCTCAAGTAC                                                                                                                                                                     >  2:280323/1‑102                                                       GGCCAGGCTCAGAAGCTGATGTCGCAGCTGCCTGTGGATGTCTACCGCGAGCTGTGCCTGTACGTGCTCAAGTACGCGCAACCTTGAGTCGGACAGGGGCAGGGCTGATCACTGGCCAGACATGCCTTCGATCACCCTGCGCAGGGAGGCGCCCAGCATGGGC                                                                             <  2:513524/163‑1                                                          CAGGCTCAGAAGCTGATGTCGCAGCTGCCTGTGGATGTCTACCGCGAGCTGTGCCTGTACGTGCTCAAGTACGCGCAAACTTGAGTCGGACAGGGGCAGGGCTGATCACTGGCCAGACATGCCTTCGATCACCCTGCGCAGGGAGGCGCCCAGCATGGGCCCATGCCCCAGACCCTCGAAGCGCTCAAAGCGCACGTCGAGGCCTTTGATCGCGGCCAGATCTGCCGCCAGTTGG  >  1:237646/1‑235                                                                                                                                                                                                                                                                                                      AGGCAGCTGCGACATCAGCTTCTGAGCCTGGCCGAGGGTTTTGCAATTGAGTTCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/617599‑617541 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggccaGGCTCAGAAGCTGATGTCGCAGCTGCCTGTGGATGTCTACCGCGAGCTGTGCCTGTACGTGCTCAAGTACGCGCAACCTTGAGTCGGACAGGGGCAGGGCTGATCACTGGCCAGACATGCCTTCGATCACCCTGCGCAGGGAGGCGCCCAGCATGGGCCCATGCCCCAGACCCTCGAAGCGCTCAAAGCGCACGTCGAGGCCTTTGATCGCGGCCAGATCTGCCGCCAGTTGG  >  AE015451/617572‑617804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.