New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	6049480 =	33 (1.280)	3 (0.120)	3/302	NT	9.2%	coding (342/2109 nt)	spoT	bifunctional (p)ppGpp synthase/hydrolase
	?	AE015451	6049563 =	28 (1.140)					coding (425/2109 nt)	spoT	bifunctional (p)ppGpp synthase/hydrolase

AGCCAAGGTCTTCGAACTCTACGCGCACGGTGTGCATCCCCAGGCGGTTTGCGATGGGGGCGTAGATCTCGAGGGTTTCCTTGGCAATGCGCCGGCGCTTTTCGCCAGACAGCACTTCCAGGGTGCGCATGTTGTGCAGGCGGTCGGCCAGCTTGACCAGGATCACGCGGATATCGCGGGCCATGGCCATGGCCATCTTCTGGAAGTTTTCCGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/6049697‑6049480 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcctgcACAACATGCGCACCCTGGAAGTGCTGTCTGGCGAAAAGCGCCGGCGCATTGCCAAGGAAACCCTCGAGATCTACGCCCCCATCGCAAACCGCCTGGGGATGCACACCGTGCGCGTAGAGTTCGAAGACCTTGGCTTCAAGGCCATGCACCCGATGCGCTCGTCGCTGATTCATCGTGCAGTGAAGAGCGCGCGCGGCAACCGC  >  AE015451/6049563‑6049765                                                                                                                                                                                                                                                                                                                                                                                                                                       AGCCAAGGTCTTCGAACTCTACGCGCACGGTGTGCATCCCCAGGCGGTTTGCGATGGGGGCGTAGATCTCGAGGGTTTCCTTGGCAATGCGCCGGCGCTTTTCGCCAGACAGCACTTCCAGGGTGCGCATGTTGTGCAGGCGGTCGGCCAGCTTGACCAGGATCACGCGGATATCGCGGGCCATGGCCATGGCCATCTTCTGGAAGTTTTCCGCCTG                                                                                                                                                                                                              <  2:173460/217‑1                                                                                                                                                                    CACGCGGATATCGCGGGCCATGGCCATGGCCATCTTCTGGAAGTTTTCCGCCTGCACAACATGCGCACCCTGGAAGTGCTGTCTGGCGAAAAGCGCCGGCGCATTGCCAAGGAAACCCTCGAGATCTACGCCCCCATCGCAAACCGCCTGGGGATGCA                                                                                                      <  1:337524/158‑1                                                                                                                                                                    CACGCGGATATCGCGGGCCATGGCCATGGCCATCTTCTGGAAGTTTTCCGCCTGCACAACATGCGCACCCTGGAAGTGCTGTCTGGCGAAAAGCGCCGGCGCATTGCCAAGGAAACCCTCGAGATCTACGCCCCCATCGCAAACCGCCTGGGGATGCA                                                                                                      >  2:337520/1‑158                                                                                                                                                                              TCGCGGGCCATGGCCATGGCCATCTTCTGGAAGTTTTCCGCCTGCACAACATGCGCACCCTGGAAGTGCTGTCTGGCGAAAAGCGCCGGCGCATTGCCAAGGAAACCCTCGAGATCTACGCCCCCATCGCAAACCGCCTGGGGATGCACACCGTGCGCGTAGAGTTCGAAGACCTTGGCTTCAAGGCCATGCACCCGATGCGCTCGTCGCg                                       >  2:173304/1‑210                                                                                                                                                                                                                 TTCCGCCTGCACAACATGCGCACCCTGGAAGTGCTGTCTGGCGAAAAGCGCCGGCGCATTGCCAAGGAAACCCTCGAGATCTACGCCCCCATCGCAAACCGCCTGGGGATGCACACCGTGCGCGTAGAGTTCGAAGACCTTGGCTTCAAGGCCATGCACCCGATGCGCTCGTCGCTGATTCATCGTGCAGTGAAGAGCGCGCGCGGCAACCGC  >  2:286173/1‑213                                                                                                                                                                                                                     GCCTGCACAACATGCGCACCCTGGAAGTGCTGTCTGGCGAAAAGCGCCGGCGCATTGCCAAGGAAACCCTCGAGATCTACGCCCCCATCGCAAACCGCCTGGGGATGCACACCGTGCGCGTAGAGTTCGAAGACCTTGGCTTCAAGGCCATGCACCCGATGCGCTCGTCGCTGATTCATCGTGCAGTGAAGAGCGCGCGCG          <  2:296537/201‑1                                                                                                                                                                                                                                                                                                                                                                                                                                       AGCCAAGGTCTTCGAACTCTACGCGCACGGTGTGCATCCCCAGGCGGTTTGCGATGGGGGCGTAGATCTCGAGGGTTTCCTTGGCAATGCGCCGGCGCTTTTCGCCAGACAGCACTTCCAGGGTGCGCATGTTGTGCAGGCGGTCGGCCAGCTTGACCAGGATCACGCGGATATCGCGGGCCATGGCCATGGCCATCTTCTGGAAGTTTTCCGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/6049697‑6049480 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcctgcACAACATGCGCACCCTGGAAGTGCTGTCTGGCGAAAAGCGCCGGCGCATTGCCAAGGAAACCCTCGAGATCTACGCCCCCATCGCAAACCGCCTGGGGATGCACACCGTGCGCGTAGAGTTCGAAGACCTTGGCTTCAAGGCCATGCACCCGATGCGCTCGTCGCTGATTCATCGTGCAGTGAAGAGCGCGCGCGGCAACCGC  >  AE015451/6049563‑6049765

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.