New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 395366	27 (1.050)	3 (0.120)	3/302	NT	11.2%	coding (748/1200 nt)	fdhA	formaldehyde dehydrogenase
	?	AE015451	= 395394	22 (0.900)					coding (776/1200 nt)	fdhA	formaldehyde dehydrogenase

TGGTCCAGGCAGCACTGTCTACGTTGCCGGTGCTGGCCCGGTCGGCCTGGCCGCCGCTGCCTCGGCGCGCCTGCTGGGCGCCGCCTGTGTAATCGTCGGTGACCTGAACCCGGCCCGCCTGGCCCACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGTGGCCATGGCCACGAAGGTGCCAAGCACGAGGCCCCGGCCACCGTGCTGAACTCGCTGATGCAAGTGACCCGCGTGGCCGGCAACATCGGTATCCCGGGCCTGTACGTGACCGAAGACCCGGGCGCGGTGGATGCCGCTGCCAAGATCGGCGCGCT  >  AE015451/395170‑395577                                                                                                                                                                                                     |                                                                                                                                                                                                                    cggTCCAGGCAGCACTGTCTACGTTGCCGGTGCTGGCCCGGTCGGCCTGGCCGCCGCTGCCTCGGCGCGCCTGCTGGGCGCCGCCTGTGTAATCGTCGGTGACCTGAACCCGGCCCGCCTGGCCCACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCg                                                                                                                                                                                                            <  1:355115/205‑1 (MQ=255)                    tACGTTGCCGGTGCTGGCCCGGTCGGCCTGGCCGCCGCTGCCTCGGCGCGCCTGCTGGGCGCCGCCTGTGTAATCGTCGGTGACCTGAACCCGGCCCGCCTGGCCCACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGtg                                                                                                                                                            <  1:250607/235‑1 (MQ=255)                     aCGTTGCCGGTGCTGGCCCGGTCGGCCTGGCCGCCGCTGCCTCGGCGCGCCTGCTGGGCGCCGCCTGTGTAATCGTCGGTGACCTGAACCCGGCCCGCCTGGCCCACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGtggc                                                                                                                                                          >  1:449486/1‑236 (MQ=255)                                 cTGGCCCGGTCGGCCTGGCCGCCGCTGCCTCGGCGCGCCTGCTGGGCGCCGCCTGTGTAATCGTCGGTGACCTGAACCCGGCCCGCCTGGCCCACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTg                                                                                                                                                                                                 >  2:358259/1‑185 (MQ=255)                                                    cgccgcTGCCTCGGCGCGCCTGCTGGGCGCCGCCTGTGTAATCGTCGGTGCCCTGAACCCGGCCCGCCTGGCCCACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACAgcgcagtccacttccggctcgccgagaatgtcgacgatctgctcgtgcagcggggtgtccttggacaggtcgaccacttcgaagccttgc                                                                                                                           <  1:230887‑M1/236‑91 (MQ=255)                                                        gcTGCCTCGGCGCGCCTGCTGGGCGCCGCCGGTGTAATCGTCGGTGACCTGAACCCGGCCCGCCTGGCCCACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGtg                                                                                                                                                            <  2:339515/199‑1 (MQ=255)                                                          tGCCTCGGCGCGCCTGCTGGGCGCCGCCTGTGTAATCGTCGGTGACCTGAACCCGGCCCGCCTGGCCCACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGa                                                                                                                                                                                               >  1:75233/1‑162 (MQ=255)                                                            ccTCGGCGCGCCTGCTGGGCGCCGCCTGTGTAATCGTCGGTGACCTGAACCCGGCCCGCCTGGCCCACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGTGGCCATGGCCACGAAGGTGCCAAGCACGAGGc                                                                                                                             <  1:364623/226‑1 (MQ=255)                                                                     gcCTGCTGGGCGCCGCCTGTGTAATCGTCGGTGACCTGAACCCGGCCCGCCTGGCCCACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCtgtcgaag                                                                                                                                                                                 >  1:411351‑M2/1‑157 (MQ=255)                                                                          ctgGGCGCCGCCTGTGTAATCGTCGGTGACCTGAACCCGGCCCGCCTGGCCCACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGTGGCCATGGCCACGAAGGTGCCAAGCACGAGGCCCCGGCCACCGTGCTGAACTCGc                                                                                                      <  1:270385/235‑1 (MQ=255)                                                                                    ccTGTGTAATCGTCGGTGACCTGAACCCGGCCCGCCTGGCCCACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGTGGCCATGGCCACGAAGGTGCCAAGCACGAGGCCCCGGCCACCGTGCTGAACTCGCTGATGCAAGt                                                                                            >  1:390434/1‑235 (MQ=255)                                                                                             tcgtcgGTGACCTGAACCCGGCCCGCCTGGCCCACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGc                                                                                                                                                                                <  2:306682/142‑1 (MQ=255)                                                                                                     gACCTGAACCCGGCCCGCCTGGCCCACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGtggccatgg                                                                                                                                                     >  1:232901/1‑161 (MQ=255)                                                                                                     gACCTGAACCCGGCCCGCCTGGCCCACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGtggccatgg                                                                                                                                                     <  2:232897/161‑1 (MQ=255)                                                                                                     gACCTGAACCCGGCCCGCCTGGCCCACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGTGGCCATGGCCACGAAGGTGCCAAGCACGAGGCCCCGGCCAc                                                                                                                    >  2:329654/1‑194 (MQ=255)                                                                                                     gACCTGAACCCGGCCCGCCTGGCCCACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGTGGCCATGGCCACGAAGGTGCCAAGCACGAGGCCCCGGCCACCGTGCTGAACTCGCTGATGCAAGTGACCCGCGTGGCCGGCa                                                                           >  1:305265/1‑235 (MQ=255)                                                                                                              ccGGCCCGCCTGGCCCACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGTGGCCATGGCCACGAAGGTGCCAAGCACGAGGCCCCGGCCACCGTGCTGAACTCGCTGATGCAAGTGACCCGCGTGGCCGGCAACATCGGTAt                                                                 <  1:358263/236‑1 (MQ=255)                                                                                                                  cccGCCTGGCCCACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACAgcgcagtccacttccggctcgccgagaatgtcgacgatctgctcgtgcagcggggtgtccttggacaggtcgaccacttcgaagccttgcgacttggcgtgggccaggcgg                                                                                                      <  1:432886‑M1/195‑112 (MQ=255)                                                                                                                   ccGCCTGGCCCACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCtgtcgacgatctgctcgtgcagcggggtgtccttggacaggtcgaccacttcgaagccttgcgacttggcgtgggccaggcggg                                                                                                     <  1:432886‑M2/195‑85 (MQ=255)                                                                                                                            ccACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGTGGCCATGGCCACGAAGGTGCCAAGCACGAGGCCCCGGCCACCGTGCTGAACTCGCTGATGCAAGTGACCCGCGTGGCCGGCAACAt                                                                       <  1:1895/216‑1 (MQ=255)                                                                                                                                        gCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCtgtcgacgatctgctcgtgcagcggggtgtccttggacaggtcgaccacttcgaagccttgcgacttggcgtgggccaggcgggccgggttcagggcaccgacgattacacaggcggcgcccagcaggcgcgccgaggcagcggcg                                       <  1:230887‑M2/236‑147 (MQ=255)                                                                                                                                               ttCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGTGGCCATGGCCACGAAGGTGCCAAGCACGAGGCCCCGGCCACCGTGCTGAACTCGCTGATGCAAGTGAcc                                                                                        <  1:266278/180‑1 (MQ=255)                                                                                                                                                        gTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGTGGCCATGGCCACGAAGGTGCCAAGCACGAGGCCCCGGCCACCGTGCTGAACTCGCTGATGCAAGTGACCCGCGTGGCCGGCAACATCGGTa                                                                  <  2:449482/193‑1 (MQ=255)                                                                                                                                                            aCCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGTGGCCATGGCCACGAAGGTGCCAAGCACGAGGCCCCGGCCACCGTg                                                                                                                >  2:266274/1‑143 (MQ=255)                                                                                                                                                                              cGCTGCACGAGCAGATCGTCGACAgcgcagtccacttccggcccgccgagaatgtcgacgatctgctcgc                                                                                                                                                                       >  2:58804‑M1/1‑24 (MQ=255)                                                                                                                                                                              cGCTGCACGAGCAGATCGTCGACATTCTCGGCGAg                                                                                                                                                                                                          >  2:244386/1‑35 (MQ=255)                                                                                                                                                                              cGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGacg                                                                                                                                                                                                   >  2:21926/1‑40 (MQ=255)                                                                                                                                                                              cGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGTGGCCATGGCCACGAAGGTGCCAAGCACGAGGCCCCGGCCACCGTGCTGAACTCGCTGATGCAAGTGACCCGCGTGGCCGGCAACATCGGTAt                                                                 <  1:349830/172‑1 (MQ=255)                                                                                                                                                                              cGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGTGGCCATGGCCACGAAGGTGCCAAGCACGAGGCCCCGGCCACCGTGCTGAACTCGCTGATGCAAGTGACCCGCGTGGCCGGCAACATCGGTAt                                                                 >  2:349826/1‑172 (MQ=255)                                                                                                                                                                              cGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGTGGCCATGGCCACGAAGGTGCCAAGCACGAGGCCCCGGCCACCGTGCTGAACTCGCTGATGCAAGTGACCCGCGTGGCCGGCAACATCGGTATCCCGGGCCTGTACGTGACCGAAGACCCGGGCGCGGTTGATGCCGCTGCCAAGATCGGCGCGCt  >  1:221396/1‑235 (MQ=255)                                                                                                                                                                              cGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGTGGCCATGGCCACGAAGGTGCCAAGCACGAGGCCCCGGCCACCGTGCTGAACTCGCTGATGCAAGTGACCCGCGTGGCCGGCAACATCGGTATCCCGGGCCTGTACGTGACCGAAGACCCGGGCGCGGTGGATGCCGCTGCCAAGATCGGCGCGCt  >  1:222456/1‑235 (MQ=255)                                                                                                                                                                                   cACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGTGGCCATGGCCACGAAGGTGCCAAGCACGAGGCCCCGGCCACCGTGCTGAACTCGCTGATGCAAGTGACCCGCGTGGCCGGCAACATCGGTATCCCGGGCCTGTACGTGACCGAAGACCCGGGCGCGGTGGATGcc                      >  2:121760/1‑210 (MQ=255)                                                                                                                                                                                    gcgAGCAGATCGTCGACATTCTCGGCGGGCCGGAAGTGGACTGCGCtgtcgacgatctgctcgtgcagcg                                                                                                                                                                 >  2:58804‑M2/2‑46 (MQ=255)                                                                                                                                                                                              cttcgacAgcgcagtccacttccggctcgccgagaatgtcgacgatctgctcgtgcagcggggtgtccttggacaggtcgaccacttcgaagccttgcgacttggcgtgggccaggcgggccgggttcaggtcaccgacgattacacaggcggcgcccagcaggc                                                        >  1:411351‑M1/3‑8 (MQ=255)                                                                                                                                                                                              cgtcgACATTCTCGGCGAGCCGGAAGTGGACCGCGCTGTCGACGCCGTCGGCGTCGAGGCCCGCGGCCATGGCCAAGAAGGTGccg                                                                                                                                       >  2:1474/1‑85 (MQ=255)                                                                                                                                                                                                     |                                                                                                                                                                                                                    TGGTCCAGGCAGCACTGTCTACGTTGCCGGTGCTGGCCCGGTCGGCCTGGCCGCCGCTGCCTCGGCGCGCCTGCTGGGCGCCGCCTGTGTAATCGTCGGTGACCTGAACCCGGCCCGCCTGGCCCACGCCAAGTCGCAAGGCTTCGAAGTGGTCGACCTGTCCAAGGACACCCCGCTGCACGAGCAGATCGTCGACATTCTCGGCGAGCCGGAAGTGGACTGCGCTGTCGACGCCGTCGGCTTCGAGGCCCGTGGCCATGGCCACGAAGGTGCCAAGCACGAGGCCCCGGCCACCGTGCTGAACTCGCTGATGCAAGTGACCCGCGTGGCCGGCAACATCGGTATCCCGGGCCTGTACGTGACCGAAGACCCGGGCGCGGTGGATGCCGCTGCCAAGATCGGCGCGCT  >  AE015451/395170‑395577

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.