New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5325153	15 (0.580)	4 (0.170)	4/290	NT	23.1%	coding (66/279 nt)	PP_4685	conserved protein of unknown function
	?	AE015451	= 5325139	13 (0.550)					coding (52/279 nt)	PP_4685	conserved protein of unknown function

GCCCGCCAATGGGCAGGCACAGGCCGCTCACCCTCCGATGGCAAAAAGCCGCATATTTCCCAACGCCCGCTACACTCCTCTCAGACCTGCTCGCGATTTATCCCCCCATTCCCGTTCAGCCATCGCAAGGAGGCTCGATGAACGATGAATTGCAGCATCTGAAGAACCTTGGCAAGACGTCTGCGCAGTGGCTGCATGCAGCCGGCATCCACAGTGCATCGGATTTGCGCCGCCTGGGCGCGGTGGGTGCGTACCAGGCCGTGAAGACACGAGGGTTCCGTGCATCGAAGGTGCTGTTGTATGCCATTGAAGGCGCCCTGCTGGACATGCACTGGAACGATTTACCGCTCGAACGCAAGGAAGCACTCAACCAACAATTGGACGCGAAAAACCCTACGCAAAAAAAACCCAAATAATC  >  AE015451/5324951‑5325368                                                                                                                                                                                                           |                                                                                                                                                                                                                        gccCGCCAATGGGCAGGCACAGGCCGCTCACCCTCCGATGGCAAAAAGCCGCATATTTCCCAACGCCCGCTACACTCCTCTCAGACCTGCTCGCGATTTATCCCCCCATTCCCGTTCAGCCATCGCAAGGAGGCTCGATGAACGATGAATTGCAGCATCTGAAGAACCTTGGCAAGACGTCTGCGCAGTGGCTGCATGCAGCCGGCATCCACAg                                                                                                                                                                                                              >  1:42962/1‑214 (MQ=255)                         cGCTCACCCTCCGATGGCAAAAAGCCGCATATTTCCCAACGCCCGCTACACTCCTCTCAGACCTGCTCGCGATTTATCCCCCCATTCCCGTTCAGCCATCGCAAGGAGGCTCGATGAACGATGAATTGCAGCATCTGAAGAACCTTGGCAAGACGTCTGCGCAGTGGCTGCATGCAGCCGGCATCCACAGTGCATCGGATTTGCGCCGCCTGGGCGCGGTGGGTGCGTACCAGGcc                                                                                                                                                                >  1:227896/1‑236 (MQ=255)                              aCCCTCCGATGGCAAAAAGCCGCATATTTCCCAACGCCCGCTACACTCCTCTCAGACCTGCTCGCGATTTATCCCCCCATTCCCGTTCAGCCATCGCAAGGAGGCTCGATGAACGATGAATTGCAGCATCTGAAGAACCTTGGCAAGACGTCTGCGCAGTGGCTGCATGCAGCCGGCATCCACAGTGCATCGGa                                                                                                                                                                                                     >  1:64992/1‑194 (MQ=255)                              aCCCTCCGATGGCAAAAAGCCGCATATTTCCCAACGCCCGCTACACTCCTCTCAGACCTGCTCGCGATTTATCCCCCCATTCCCGTTCAGCCATCGCAAGGAGGCTCGATGAACGATGAATTGCAGCATCTGAAGAACCTTGGCAAGACGTCTGCGCAGTGGCTGCATGCAGCCGGCATCCACAGTGCATCGGATTTGCGCCGCCTGGGCGCGGTGGGTGCGTACCAGGCCGTGaa                                                                                                                                                           >  1:87400/1‑236 (MQ=255)                              aCCCTCCGATGGCAAAAAGCCGCATATTTCCCAACGCCCGCTACACTCCTCTCAGACCTGCTAGCGATTTATCCCCCCATTCCCGTTCAGCCATCGCAAGGAGGCTCGATGAACGATGAATTGCAGCATCTGAAGAACCTTGGCAAGACGTCTGCGCAGTGGCTGCATGCAGCCgg                                                                                                                                                                                                                       >  1:438990/1‑176 (MQ=255)                                                         ttCCCAACGCCCGCTACACTCCTCTCAGACCTGCTCGCGATTTATCCCCCCATTCCCGTTCAGCCATCGCAAGGAGGCTCGATGAACGATGAATTGCAGCATCTGAAGAACCTTGGCAAGACGTCTGCGCAGTGGCTGCATGCAGCCGGCATCCACAGTGCATCGGATTTGCGCCGCCTGGGCGCGGTGGGTGCGTACCAGGCCGTGAAGACACGAGGGTTCCGTGCATCGAAg                                                                                                                                  <  1:200154/234‑1 (MQ=255)                                                                   ccGCTACACTCCTCTCAGACCTGCTCGCGATTTATCCCCCCATTCCCGTTCAGCCATCGCAAGGAGGCTCGATGAACGATGAATTGCAGCATCTGAAGAACCTTGGCAAGACGTCTGCGCAGTGGCTGCATGCAGCCGGCATCCACAGTGCATCGGATTTGCGCCGCCTGGGCGCggtg                                                                                                                                                                               <  1:139949/179‑1 (MQ=255)                                                                                       cTGCTCGCGATTTATCCCCCCATTCCCGTTCAGCCATCGCAAGGAGGCTCGATGAACGATGAATTGCAGCATCTGAAGAACCTTGGCAAGACGTCTGCGCAGTGGCTGCATGCAGCCGGCATCCACAGTGCATCGGATTTGCGCCGCCTGGGCGCGGTGGGTGCGTACCAGGCCGTGAAGACACGAGGGTTCCGTGCATCGAAGGTGCtgtt                                                                                                                          >  2:216210/1‑212 (MQ=255)                                                                                               gATTTATCCCCCCATGCCCGTTCAGCCATCGCAAGGAGGCTCGATGAACGATGAATTGCAGCATCTGAAGAACCTTGGCAAGACGTCTGCGCAGTGGCTGCATGCAGCCGGCATCCACAGTGCATCGGATTTGCGCCGCCTGGgcg                                                                                                                                                                                    <  2:385081/146‑1 (MQ=255)                                                                                                                                        cgaggaacgatgaaTTGCAGCATCTGAAGCACCTTGGCAAGACGTCTGCGCAGTGGCTGCATGCAGCCGGCATCCACAGTGCATCGGATTTGCGCCGCCTGGGCGCGGTGGGTGCGTACCAGGCCGTGAAGACACGa                                                                                                                                                    >  2:510489/1‑137 (MQ=255)                                                                                                                                         gatgaacgatgaaTTGCAGCATCTGAAGAACCTTGGCAAGACGTCTGCGCAGTGGCTGCATGCAGCCactgcgcagacgtcttg                                                                                                                                                                                                        >  1:48360‑M1/1‑67 (MQ=255)                                                                                                                                         gatgaacgatgaaTTGCAGCATCTGAAGAACCTTGGCAAGACGTCTGCGCAGTGGCTGCATGCAGCCGGCATCCACAGTGCATCGGATTTGCGCCGCCTGGGCGCGGTGGGTGCGTACCAGGCCGTGAAGACACGAGGGTTCCGTGCATCGAAGGTGCTGTTGTATGCCATTGAAGGCGCCCTGCTGGACa                                                                                             >  1:289691/1‑191 (MQ=255)                                                                                                                                         gatgaacgatgaaTTGCAGCATCTGAAGAACATTGGCAAGACGTCTGCGCAGTGGCTGCATGCAGCCactgcgcagacgtcttg                                                                                                                                                                                                        <  2:48357‑M1/84‑18 (MQ=255)                                                                                                                                                    aagtgcaGCATCTGAAGAGCCTTGGCAAGACGTCTGCGCAGTGGCTGCATGCAGCCactgcgcagacgtcttgccaaggttcttcagatgctgcaattcatcgttcatcgagcctccttgcgatggctgaacggga                                                                                                                                         <  1:3940‑M1/133‑81 (MQ=255)                                                                                                                                                      ttGCAGCATCGGAAGAACCTTGGCAAGACGTCTGCGCAGTGGCTGCGTGCAGCCGGCATCCACAGTGCATCGGATTTGCGCCGCCTGGGCGCGGTGGGTGCGTACCAGGCCGTGAAGACACGAGGGTTCCGTGCATCGAAg                                                                                                                                  <  2:42959/141‑1 (MQ=255)                                                                                                                                                                            gCAAGACGTCTGCGCAGTGGCTGCATGCAGCCGGCATCCACAGTGCATCGGATTTGCGCCGCCTGGGCGCGGTGGGTGCGTACCAGGCCGTGAAGACACGAGGGTTCCGTGCATCGAAGGTGCTGTTGTATGCCATTGAAGGCGCCCTGCTGGACATGCACTGGAACGATTTACCGCTCGAACGCAAGGAAGCACTCAACCAACAATTGGACGCGAAAAACCCTACGCaaaaaaa              >  1:233129/1‑235 (MQ=255)                                                                                                                                                                                        cgcAGTGGCTGCATGCAGCCactgcgcagacgtcttgccaaggttcttcagatgctgcaattcatcgttcatcgagcctccttgcgatggctgaacgggaatggggggataaatcgcgagcaggtctgagaggagtgtagcgggcgttgggaaatatgcggctttttgccatcggagggtgagcggcctgtgcctgcccattggcgggcaggcacaggaaggtgacgaacttaca  <  1:443690‑M1/235‑216 (MQ=255)                                                                                                                                                                                        cgcAGTGGCTGCATGCAGCCGGCATCCACAGTGCATCGGATTTGCGCCGCCTGGGCGCGGTGGGTGCGGACCAGGCCGTGAAGACACGAGGGTTCCGTGCATCGAAGGTGCTGTTGTATGCCATTGAAGGCGCCCTGCTGGACATGCACTGGAACGATTTACCGCTCGAACGCAAGTAAGCACTCAACcaacac                                           >  1:69078/1‑193 (MQ=255)                                                                                                                                                                                              ggCTGCATGCAGCCGGCATCCACAGTGCATCGGATTTGCGCCGCCTGGGCGCGGGGGGTGCGTACCAGGCCGTGAAGACACGAGGGTTCCGTGCATCGAAGGTGCTGTTGTATGCCATTGAAGGCGCCGTGCTGGACATg                                                                                           >  2:82455/1‑140 (MQ=255)                                                                                                                                                                                               gCTGCATGCAGCAGGCATCCACAGGGCATCGGATTTGCGCCGCCTGGGCGCGGTGGGTGCGTACCAGGCCGTGAAGACACGAGGGTTCCGTGCATCGAAGGTGCTGTTGTATGCCATTGAAGGCGCCCTGCTGGACATGCACTGGAACGATTTACCGCTCGAACGCAAGGAAGCACTCAACCAACAATTGGACGCGAAAAACCCTACGCAAAAAAAAcc           <  1:80782/219‑1 (MQ=255)                                                                                                                                                                                                   catgcaGCCactgcgcagacgtcttgccaaggttcttcagatgctgcaattcatcgttcatcgagcctccttg                                                                                                                                                         >  2:165371‑M1/1‑9 (MQ=255)                                                                                                                                                                                                           |                                                                                                                                                                                                                        GCCCGCCAATGGGCAGGCACAGGCCGCTCACCCTCCGATGGCAAAAAGCCGCATATTTCCCAACGCCCGCTACACTCCTCTCAGACCTGCTCGCGATTTATCCCCCCATTCCCGTTCAGCCATCGCAAGGAGGCTCGATGAACGATGAATTGCAGCATCTGAAGAACCTTGGCAAGACGTCTGCGCAGTGGCTGCATGCAGCCGGCATCCACAGTGCATCGGATTTGCGCCGCCTGGGCGCGGTGGGTGCGTACCAGGCCGTGAAGACACGAGGGTTCCGTGCATCGAAGGTGCTGTTGTATGCCATTGAAGGCGCCCTGCTGGACATGCACTGGAACGATTTACCGCTCGAACGCAAGGAAGCACTCAACCAACAATTGGACGCGAAAAACCCTACGCAAAAAAAACCCAAATAATC  >  AE015451/5324951‑5325368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.