New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2472115	19 (0.740)	5 (0.200)	5/304	NT	23.7%	intergenic (+19/+130)	PP_2166/PP_2167	Anti‑anti‑sigma factor/putative PhoD‑like phosphatase
	?	AE015451	2472313 =	14 (0.570)					coding (1783/1851 nt)	PP_2167	putative PhoD‑like phosphatase

GGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATCCAGCAAGCGCCGGGGGAACTCGTTCTTGATTCCGCTGCTGGTCACCTGCCACAAGTGC  >  AE015451/2472123‑2472542                                                                                                                                                                                               |                                                                                                                                                                                                                                      gtcgatcgaccgataccctgcaccgattgcctgaccgacttgccgtcgcaggaccagaatgaagatgtggtgcgctccaaggtgctggaggcgcacaagatcctcatgggcctgaatgactccaaccgcgaagccttccatgatctggtcaatgcgctggagcggagctgatctatagcctgtgccggccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCg                                                                                                                                                                                                     <  1:21412‑M2/35‑1 (MQ=255)      aaCCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGCTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTc                                                                                                                                                                                            >  2:273106/1‑229 (MQ=255)                                                    cccccAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCa                                                                                                                                        >  1:339634/1‑235 (MQ=255)                                                          ctCAGGTGTAGGAGCGGGTTTACACGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCcaca                                                                                                                                                                                        <  1:286570/180‑1 (MQ=255)                                                                  tAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTgg                                                                                                                         >  1:480716/1‑236 (MQ=255)                                                                    ggAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACCGCCGTTCCCCGGCCTTGCtgt                                                                                                                                                                   >  2:482182/1‑192 (MQ=255)                                                                       tgcgctccaaggtgctggaggcgcacaagatcctcatgggcctgaatgactccaaccgcgaagccttccatgatctggtcaatgcgctggagcgtagctgatctatagcctgtgccggccGCCCCTGGTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCt                                                                                                                                                                         >  1:96558‑M2/121‑183 (MQ=255)                                                                            tccaaggtgctggaggcgcacaagatcctcatgggcctgaatgactccaaccgcgaagccttccatgatctggtcaatgcgctggagcggagctgatctatagcctgtgccggccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCg                                                                                                                                                          <  1:455886‑M2/78‑1 (MQ=255)                                                                            tccaaggtgctggaggcgcacaagatcctcatgggcctgaatgactccaaccgcgaagccttccatgatctggtcaatgcgctggagcggagctgatctatagcctgtgccggccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCg                                                                                                                                                          >  2:455882‑M2/116‑193 (MQ=255)                                                                             ttACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCtcg                                                                                                                                                                       >  1:258556/1‑177 (MQ=255)                                                                             ttACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAg                                                                                                                 >  2:246966/1‑233 (MQ=255)                                                                                                                    aacctcACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAgc                                                                                                    <  2:390065/204‑1 (MQ=255)                                                                                                                        ctccaaccgcgaagccttccatgatctggtcaatgcgctggagcggagctgatctatagcctgtgccggccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGa                                                                   <  1:474850‑M2/165‑1 (MQ=255)                                                                                                                            tACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCCttt                                                                                                                                     >  2:234475/1‑166 (MQ=255)                                                                                                                                 ccGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCCCAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTAcg                                                                                                                                                      >  1:18448/1‑144 (MQ=255)                                                                                                                                            aCTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATCCAGCAAg                                                     <  2:480712/230‑1 (MQ=255)                                                                                                                                                     ccTCCCCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAgcgg                                                                                                         <  1:98537/169‑1 (MQ=255)                                                                                                                                                                      tCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGca                                                                                                                                                 <  2:339630/112‑1 (MQ=255)                                                                                                                                                                      tCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCCGCGCTTGGTATACCAGTTGAGCGGCGAGCGCGGTGCATACAACCCGCGGTTGAGCCGGTc                                                                     >  1:53723/1‑188 (MQ=255)                                                                                                                                                                                     tgtgccggccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATCCAGCAAGCGCCGGGGGa                                           >  1:276666‑M2/11‑199 (MQ=255)                                                                                                                                                                                          cggccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCgg                                                                                                                                                                                                    >  1:50590‑M2/6‑41 (MQ=255)                                                                                                                                                                                          cggccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCgg                                                                                                                                                                                                    <  2:50587‑M2/36‑1 (MQ=255)                                                                                                                                                                                            gccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATCCAGCAAGCGCCGGGGGAACTCGTTCTTGATTCCGCTGCTGGTCACCTGCCACAAGTGc  >  2:276854‑M2/4‑233 (MQ=255)                                                                                                                                                                                               |                                                                                                                                                                                                                                      GGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATCCAGCAAGCGCCGGGGGAACTCGTTCTTGATTCCGCTGCTGGTCACCTGCCACAAGTGC  >  AE015451/2472123‑2472542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.