New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5509910	21 (0.810)	3 (0.130)	3/278	NT	14.9%	coding (109/1488 nt)	urtB	putative Urea ABC transporter
	?	AE015451	= 5509890	16 (0.710)					coding (89/1488 nt)	urtB	putative Urea ABC transporter

TGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGCCCTGGCCAGCCACCAGTTGCTCAGCGACAACAGCGAAACCCGCCTGGCCGCAGCCCAGCAACTACA  >  AE015451/5509667‑5510106                                                                                                                                                                                                                                |                                                                                                                                                                                                                         tGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGC                                                                                                                                                                                                                 <  2:271228‑M1/233‑1 (MQ=255)                                                       aGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGGCGGCCTGCTC                                                                                                                                                                                                       >  2:272253‑M1/1‑189 (MQ=255)                                                                      cACCGTCTCTGTGTAGGAGCGGGGTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGACGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAgg                                                                                                                                                                                                  >  2:468287/1‑179 (MQ=255)                                                                              ctGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCGCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCcgagcagggcggcctgctcggcgggcttggc                                                                                                                                                                                           >  1:272257‑M2/1‑147 (MQ=255)                                                                                          gggCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGa                                                                                                                                                                                                     >  2:197001/1‑156 (MQ=255)                                                                                            gCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTg                                                                                                                                                                                               >  2:410721/1‑160 (MQ=255)                                                                                            gCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACaa                                                                                                                    >  1:274061/1‑235 (MQ=255)                                                                                             cTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCgctgct                                                                                                                                                           <  1:369167/195‑1 (MQ=255)                                                                                              tCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGa                                                                                                                                                        >  1:291393/1‑197 (MQ=255)                                                                                              tCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGa                                                                                                                                                        >  1:454819/1‑197 (MQ=255)                                                                                                           ctCCAACCCCGATTCCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCCCCTGCTGCTAATCCCCCTGGCACCCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGaaa                                                                                                                                                      <  1:109569/185‑1 (MQ=255)                                                                                                                    cGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCCAGGCCGCATCGCCACCAATGACAAGCGCAAGGt                                                                                                           >  1:94564/1‑220 (MQ=255)                                                                                                                         tCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGACTTCTTTCTCACCGCCAAGCCCGCcg                                                                                                                                                                                                                        <  2:118004‑M2/106‑3 (MQ=255)                                                                                                                         tCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCCGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCcgagcaggccggcctgctcggcgggcttggcggtgagaaagaattcgccctcgctggcgtgggttgccagggggattagcagcaggagggtgag                                                                                                                            >  2:508925‑M2/1‑104 (MQ=255)                                                                                                                                    ccGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATc                                                                            >  1:127047/1‑235 (MQ=255)                                                                                                                                                  tCCTGCTCACCCTCCTGCTGCTAACCCCCCTGCCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGgcgggcttggcggtgagaaagaattcgccctcgctggcgtgggttgccagggggattagcagcagg                                                                                                                                    <  2:277653‑M1/165‑67 (MQ=255)                                                                                                                                                    cTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTgcg                                                                                                        <  2:211705/191‑1 (MQ=255)                                                                                                                                                       cTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGgcgggcttggcggtgagaaagaattcgccctcgctggcgtgggttgccagggggattagcggcaggagggtgagcaggagtctgagcatgcgggcaatcctgga                                                                                              >  2:508925‑M1/1‑94 (MQ=255)                                                                                                                                                               cctGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCcgagcaggccggcctgctcggcgggcttggcggtgagaaagaattcgccctcgctggcgtgggttggcaggggggttagcagcaggagggtgagcagga                                                                                                                       <  2:277653‑M2/165‑100 (MQ=255)                                                                                                                                                                           cccccTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCG                                                                                                                                                                                                               >  1:339058‑M1/1‑65 (MQ=255)                                                                                                                                                                           cccccTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCG                                                                                                                                                                                                               <  2:339054‑M1/65‑1 (MQ=255)                                                                                                                                                                             cccTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCag                                                                                                                                   >  2:319016/1‑138 (MQ=255)                                                                                                                                                                                     aCCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAgg                                                                                                                                                                                                  >  2:72839/1‑68 (MQ=255)                                                                                                                                                                                             cAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTgc                                                                                                                                                >  1:367573/1‑110 (MQ=255)                                                                                                                                                                                             cAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTgc                                                                                                                                                <  2:367569/110‑1 (MQ=255)                                                                                                                                                                                                              ttctCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGCCCTGGCCAGCCACCAGTTGCTCAGCGACAACAGCGAAACCCGCCt                       <  1:167253/214‑1 (MQ=255)                                                                                                                                                                                                                 gcACCGCCAAGCCCGCCGAGc                                                                                                                                                                                                                     <  2:30681/20‑1 (MQ=255)                                                                                                                                                                                                                   cccGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGcc                                                                                                                                                                     <  2:39511/66‑1 (MQ=255)                                                                                                                                                                                                                   aCCGCCAGGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCAt                                                                                                                                   <  1:72842/101‑1 (MQ=255)                                                                                                                                                                                                                      gCCAAGCCCGCCGAGCAGGCCGCCCTGCTCGgcgggcttggcggtgagaaagaattcgccctcgctggcgtgggttgccagggggattagcagcaggcgggtgagcaggagtctgagcatgcgggcaatcctggaaatcggtgttggattcttcgcgggtgagcccgctcctacacag                                                   >  1:272257‑M1/1‑31 (MQ=255)                                                                                                                                                                                                                        cAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGCCCTGGCCAGCCACCAGTTGCTCAGCGACAACAGCGAAACCCGCCTGGCCGCAGCCCAGCAACTACa  >  1:275103/1‑225 (MQ=255)                                                                                                                                                                                                                              cgccgAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGCCCTGGCCAGCCACCAGTTGCTCAGCGACAACAGCGAAACCCGCCTgg                     <  2:451446/200‑1 (MQ=255)                                                                                                                                                                                                                                |                                                                                                                                                                                                                         TGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGCCCTGGCCAGCCACCAGTTGCTCAGCGACAACAGCGAAACCCGCCTGGCCGCAGCCCAGCAACTACA  >  AE015451/5509667‑5510106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.