New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	199488 =	62 (1.080)	5 (0.090)	5/332	NT	7.6%	coding (4994/26049 nt)	PP_0168	putative surface adhesion protein
	?	AE015451	199512 =	62 (1.110)					coding (5018/26049 nt)	PP_0168	putative surface adhesion protein

GATGGTGTAGGTGATCTCACCGCCTTCGGTCACCGAAGGGGTGGCAGTCAGCTTGGCCACCACTTCGTCGAGGGTGTCGGTGACTTGAACCGAAGCAGCACCGCCCAGCTCAAGGTTCTCGAATGCAGCACCAGTGGCGTCCACCGCCGAGTTGATGCCCAAGCTGATCTGGCCAGCGTCCTGATAGACGTCATCGCCTTGCGCGTCGTGGGTGTACGGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/199711‑199488 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCA  >  AE015451/199512‑199742                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GATGGTGTAGGTGATCTCACCGCCTTCGGTCACCGAAGGGGTGGCAGTCAGCTTGGCCACCACTTCGTCGAGGGTGTCGGTGACTTGAACCGAAGCAGCACCGCCCAGCTCAAGGTTCTCGAATGCAGCACCAGTGGCGTCCACCGCCGAGTTGATGCCCAAGCTGATCTGGCCAGCGTCCTGATAGACGTCATCGCCTTGCGCGTCGTGGGTGTACGGCGCGCAAGGCGATGAC                                                                                                                                                                                                                              >  1:824319/1‑235  ATGGTGTAGGTGATCTCACCGCCTTCGGTCACCGAAGGGGTGGCAGTCAGCTTGGCCACCACTTCGTCGAGGGTGTCGGTGACTTGAACCGAAGCAGCACCGCCCAGCTCAAGGTTCTCGAATGCAGCACCAGTGGCGTCCACCGCCGAGTTGATGCCCAAGCTGATCTGGCCAGCGTCCTGATAGACGTCATCGCCTTGCGCGTCGTGGGTGTACGGCGCGCAAGGCGATGAC                                                                                                                                                                                                                              <  2:824316/234‑1                                                                                                                                         aCGTCCACCGCGGAGTTGATGCCCAGGCTGATCTGGCCCGCGTCCTGATAGACGTCATCGCCTTGCGCGTCGTGGGTGTACGGC                                                                                                                                                                                                                                             <  2:637878/83‑1                                                                                                                                                                             CCAGCGTCCTGATAGACGTCATCGCCTTGCGCGGCGTGGGTGTACGGCGCGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAGCTTGGGCATCA                                                                                                                                                                                         <  1:600156/100‑1                                                                                                                                                                                                              TCGTGGGTGTACGGCGCCCAAGGCGATGACGTCTATCAGGACGGTGGCCAGATCAGCTTGGGCATCAACTCGGCGGT                                                                                                                                                                               <  2:915750/77‑1                                                                                                                                                                                                              TCGTGGGTGTACCGCGCGCATGGCGATGTCGTCTATCAGGACGCTGGCCAGATCAGCTTGGGCATCAACTCG                                                                                                                                                                                    <  1:485609/72‑1                                                                                                                                                                                                                         CGGTGCGCGAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAG                                                        <  1:953210/185‑1                                                                                                                                                                                                                            CGCGCAGGGCGATGACGTCTATCAGGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCT                                                                                                                                           <  2:366990/99‑1                                                                                                                                                                                                                            CGCGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGTTCA  >  1:136113/1‑236                                                                                                                                                                                                                            CGCGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTG                                                                                                                                          >  2:1088083/1‑100                                                                                                                                                                                                                              CGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAGCTTGGGCATCAACTCGGCGGTGGAC                                                                                                                                                                           >  2:191592/1‑65                                                                                                                                                                                                                              CGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCA                                                                                                                                                                                                     <  2:1062517/39‑1                                                                                                                                                                                                                              CGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGATC                                                                                                                                                                                                      >  1:1049431/1‑38                                                                                                                                                                                                                               GCAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCAC                                           <  2:1017445/192‑1                                                                                                                                                                                                                               GCAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCG                                                           >  1:669936/1‑176                                                                                                                                                                                                                               GCAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCG                                                           <  2:669933/176‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GATGGTGTAGGTGATCTCACCGCCTTCGGTCACCGAAGGGGTGGCAGTCAGCTTGGCCACCACTTCGTCGAGGGTGTCGGTGACTTGAACCGAAGCAGCACCGCCCAGCTCAAGGTTCTCGAATGCAGCACCAGTGGCGTCCACCGCCGAGTTGATGCCCAAGCTGATCTGGCCAGCGTCCTGATAGACGTCATCGCCTTGCGCGTCGTGGGTGTACGGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/199711‑199488 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCA  >  AE015451/199512‑199742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.