New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 208067	NA (NA)	5 (0.090)	5/326	NT	NA	coding (13573/26049 nt)	PP_0168	putative surface adhesion protein
	?	AE015451	= 209370	NA (NA)					coding (14876/26049 nt)	PP_0168	putative surface adhesion protein

CAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCAGCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/207826‑208067 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgtgaGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCGGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCCTGGGGTACCCGGCTCGTCGGTGACCGACGTGCTGACCGGGGTCTTGTCGAGTGTCAGTTGCTCGAACTTACCGACGTCCGCACCTCCAACGGTTGCGATCGACATCACGACAGGGTCGTTGGTGCCG  <  AE015451/209370‑209140                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCAGCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGG                                                                                                                                                                                                                                               <  1:761030/236‑1                CAAATCGATCGCAACCGTTGAAGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCAGCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGA                                                                                                                                                                                                                                         <  1:857112/227‑1                             ACCGTTGAAGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCAGCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGG                                                                                                                                                                                                                                               <  2:817388/208‑1                                              TGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCAGCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTC                                                                                                                                                                                                                                             >  1:176642/1‑193                                              TGTCGGAAAGTGCGAGCAACTGACACTGGACAAGACCCCGGTCAGCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGT                                                                                                                                                                                                     <  1:287888/233‑1                                                 CGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCAGCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGG                                                                                                                                                                                                                                               <  2:768423/188‑1                                                    CAAGTGCGAACAACTGACACTGGACAAGACCCCGGTCAGCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGG                                                                                                                                                                                                                                               <  1:163328/185‑1                                                          CGAGCAACTGACACTGGACAAGACCCCGGTCAGCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACGGTTCACGTCAACCAGCCGCTGGCTCACGACCCGGTCtcg                                                                                                                                                                                                                                          >  1:523830/1‑181                                                                                       TCAGCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGAGCCAGCGGCT                                                                                                                                                                                                                               >  1:131784/1‑166                                                                                            ACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCG                                                                                                                                                                                                                                            <  2:131782/148‑1                                                                                              GTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGAGCCAGCGGC                                                                                                                                                                                                                                <  2:71650/158‑1                                                                                                  gtcACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGAGCCAGCGGCTGGTT                                                                                                                                                                                                                           <  1:1083258/156‑1                                                                                                                     CGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTC                                                                                                                                                                                                        <  2:868925/159‑1                                                                                                                                                              aCCGACCACACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTG                                                                                                                                                                                                                                          <  1:980170/83‑1                                                                                                                                                                  ACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTC                                                                                                                                                                                                                                             <  2:1073706/77‑1                                                                                                                                                                                    AGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGA                                                                                                                                                                                                                                         >  2:584648/1‑63                                                                                                                                                                                              ACCGACCTTCACTGTTCACGTCAACCAGCCGCTTGCTCACGACCTGGTCGTG                                                                                                                                                                                                                                          <  2:594115/52‑1                                                                                                                                                                                                                                           GGTCGTGAGCCAGAGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGACGTCTGGTCGGCGGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCCTGGGGTACCCGGCTCGTCGGTGACCGACGTGCTGACCGGGGTCTTGTCGAGTGTCAGTTGCT                                                                   <  1:138698/174‑1                                                                                                                                                                                                                                            GTCGTGGGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCT                                                                                                                                                                                           <  2:763869/53‑1                                                                                                                                                                                                                                            GTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCGGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCCTGGGGTACCCGGCTCGTCGGTGACCGACGTGCTGACCGGGGTTTTGTCGAGTGTCAGTTGCTCGAACTTACCGACGTCCGCACCTCCAACGGTTGCGATCGA                           <  2:935594/213‑1                                                                                                                                                                                                                                            GTCGTGAGCCAGCGGCTGGTTGACGTGAACA                                                                                                                                                                                                                 <  2:493070/31‑1                                                                                                                                                                                                                                             TCGTGAGCCAGCGGCTGGTTGACGTGAACGGTGAAGGTCGGTTTGACGTTCTCGGCCACCGAAGTCTGGTCGGCGGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCCTGGGGTACCCGGCTCGTCGGTGACCGACGTGCT                                                                                                <  1:928481/143‑1                                                                                                                                                                                                                                             TCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGTGGGTGATAGAGACATTTACCAGGTCG                                                                                                                                            >  1:861190/1‑99                                                                                                                                                                                                                                             TCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCGGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCCTGGGGTACCCGGCTCGTCGGTGACCGACGTGCTGACCGGGGTCTTGTCGAGTGTCAGTTGCTCGAACTTACCGACGTCCGCACCTCCAACGGTTGCGATCGACATCACGACAGGGTCGTTGGTGCC   >  1:462237/1‑236                                                                                                                                                                                                                                             TCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCGGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCCTGGGGTACCCGGCTCGTCGGTGACCGACGTGCTGACCGGGGTCTTGTCGAGTGTCAGTTGCTCGAACTTACCGACGTCCGCACCTCCAACGGTTGCGAT                              <  2:334150/209‑1                                                                                                                                                                                                                                             TCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCCACCGAAGTCTGGTCGGCGGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCCTGGGGTACCCGGCTCGTCGGTGACCGACGTGCT                                                                                                >  2:928478/1‑143                                                                                                                                                                                                                                              CGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCGGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCCTGGGGTACCCGGCTCGTCGGTGACCGACGTGCTGACCGGGGTCTTGTCGAGTGTCAGTTGCTCGAACTTACCGACGTCCGCACCTCCAACGGTTGCGATCGACATCACGACAGGGTCGTTGGTGCC   >  1:562467/1‑235                                                                                                                                                                                                                                              CGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCGGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCCTGGGGTACCCGGCTCGTCGGTGACCGACGTGCTGACCGGGGTCTTGTCGAGTGTCAGTTGCTCGAACTTACCGACGTCCGCACCTCCAACGGTTGCGATCGACATCACGACAGGGTCGTTGGTG     >  2:458287/1‑233                                                                                                                                                                                                                                              CGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCGGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCCTGGGGTACCCGGCTCGTCGGTGACCGACGTGCTGACCGGGGTCTTGTCGAGTGTCAGTTGCTCGAACTTACCGACGTCCGCACCTCCAACGGTTGCGAT                              <  2:1043770/208‑1                                                                                                                                                                                                                                               GTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCGGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCCTGGGGTACCCGGCTCGTCGGTGACCGACGTGCTGACCGGGGTCTTGTCGAGTGTCAGTTGCTCGAACTTACCGACGTCCGCACCTCCAACGGTTGCGATCGACATCACGACAGGGTCGTTGGTGCCG  <  1:696880/235‑1                                                                                                                                                                                                                                               GTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCGGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCCTGGGGTACCCGGCTCGTCGGTGACCGACGTGCTGACCGGGGTCTTGTCGAGTGTCAGTTGCTCGAACTTACCGACGTCCGCACCTCCAACGGTTGCGATCGACATCACGACAGGGTCGTTGGTGCC   >  2:557113/1‑234                                                                                                                                                                                                                                               GTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTC                                                                                                                                                                                            >  1:920091/1‑49                                                                                                                                                                                                                                               GTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTC                                                                                                                                                                                            <  2:920088/49‑1                                                                                                                                                                                                                                                 GAGCAAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCGGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCCTGGGGTACCCGGCTCGTCGGTGACCGACGTGCTGACCGGGGTCTTGTCGAGTG                                                                            <  1:949039/159‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCAGCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/207826‑208067 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgtgaGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCGGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCCTGGGGTACCCGGCTCGTCGGTGACCGACGTGCTGACCGGGGTCTTGTCGAGTGTCAGTTGCTCGAACTTACCGACGTCCGCACCTCCAACGGTTGCGATCGACATCACGACAGGGTCGTTGGTGCCG  <  AE015451/209370‑209140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.