New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1228859	65 (1.130)	4 (0.070)	4/324	NT	5.6%	coding (2039/4320 nt)	PP_1072	Leucine‑rich repeat domain protein
	?	AE015451	= 1228894	73 (1.340)					coding (2074/4320 nt)	PP_1072	Leucine‑rich repeat domain protein

AGCACATGGGCGCACCTGCACGGTTGCTCGATGCCCTGGAGCTTTATCAGGCACATGAATTACACCCGGACTTCAGCGCGCCGCGACTGGCGCAGTACGTTGCTGATCGGCAAGTGCAGCCCAATGGCATCGAGCGGATACTGCGGCGCACTTTCCCCGGCCTGTCGGCTCGCTGTACCCGTGAGCTGCTTCAGCAATGCAGCGGTGCGCAGCTCGATACGCTCAGCAACGCGCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1228622‑1228859 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcagcgACCATCGTGCACGCTCGGCCACTGCCAAAGGGATCCGCTGCGCGTTGCTGAGCGTATCGAGCTGCGCACCGCTGCATTGCTGAAGCAGCTCACGGGTACAGCGAGCCGACAGGCCGGGGAAAGTGCGCCGCAGTATCCGCTCGATGCCATTGGGCTGCACTTGCCGATCAGCAACGTACTGCGCCAGTCGCGGCGCGCTGAAGTCCGGGTGTAATTCATGTGCCT  <  AE015451/1228894‑1228670                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AGCACATGGGCGCACCTGCACGGTTGCTCGATGCCCTGGAGCTTTATCAGGCACATGAATTACACCCGGACTTCAGCGCGCCGCGACTGGCGCAGTACGTTGCTGATCGGCAAGTGCAGCCCAATGGCATCGAGCGGATACTGCGGCGCACTTTCCCCGGCCTGTCGGCTCGCTGTACCCGTGAGCTGCTTCAGCAATGCAGCGGTGCGCAGCTCGATACGCTCACCAACGCG                                                                                                                                                                                                                                        >  2:478151/1‑233                                                     ACATGAATTACACCCGGACTTCAGCGCGCCGCGACTGGCGCAGTACGTTGCTGATCGGCAAGTGCAGCCCAATGGCATCGAGCGGATACTGCGGCGCACTTTCCCCGGCCTGTCGGCTCGCTGTACCCGTGAGCTGCTTCAGCAATGCAGCGGTGCGCAGCTCGATACGCTCAGCAACGCGCAGCG                                                                                                                                                                                                                                   >  1:877432/1‑186                                                     ACATGAATTACACCCGGACTTCAGCGCGCCGCGACTGGCGCAGTACGTTGCTGATCGGCAAGTGCAGCCCAATGGCATCGAGCGGATACTGCGGCGCACTTTCCCCGGCCTGTCGGCTCGCTGTACCCGTGAGCTGCTTCAGCAATGCAGCGGTGCGCAGCTCGATACGCTCAGCAACGCGCAGCG                                                                                                                                                                                                                                   <  2:877429/186‑1                                                                                                                             TGGCATCGAGCGGATACTGCGGCGCACTTTCCCCGGCCTGTCGGCTCGCTGTACCCGTGAGCTGCTTCAGCAATGCAGCGGTGCGCAGCTCGATACGCTCAGCAACGCGCAGCG                                                                                                                                                                                                                                   <  2:38755/114‑1                                                                                                                                            ACTCCGGCGCACTTGCCCCGGCCTGTCGGCTCTCTGTACCCGTGAGCTGCTGCAGCAATGCAGCGGTGCGCAGCTCGATACGCTCAGCAATGCGCAGCG                                                                                                                                                                                                                                   <  2:701794/99‑1                                                                                                                                                                       GGCTCGCTGTACCCGTGAGCTGCTTCAGCAATGCAGCGGTGCGCAGCTCGAGACGCTCAGCAACG                                                                                                                                                                                                                                          >  2:456079/1‑65                                                                                                                                                                                           TGCTTCAGCAATGCAGCGGTGCGCAGCTCGATACGCTCAGCAACGCGCAGCGACCATCGTGCACGCTCGGCCACTGCCAAAGGGATCCGCTGCGCGTTGCTGAGCGTATCGAGCTGCGCACCGCTGCATT                                                                                                                                                     >  1:910484/1‑130                                                                                                                                                                                                              TGCGCAGCTCGATACGCTCAGCAACGCGCAGCGACCATCGTGCACGCT                                                                                                                                                                                                                    >  2:620391/1‑48                                                                                                                                                                                                                      TCGATACGCTCAGCAACGCGCAGCGACCATCGTGCACGCTCGGCCACTGCCAAAGGGATCCGCTGCGCGTTGCTGAGCGTATCGAGCTGCGCACCG                                                                                                                                                            >  1:60892/1‑96                                                                                                                                                                                                                           ACGCTCAGCAACGCGCAGCGACCATCGTGCACGCTCGGCCACCGCCAAAGGGATCCGCTGCGCGTTGCCGAGCGTATCGAGCTGCGCACCGCTGCCTTGCTGCAGCCGCTCACGGGTACAGCGAGCCGGCAGGCCGGGGAA                                                                                                          >  2:222334/1‑141                                                                                                                                                                                                                                     ACGCGCAGCGACCATCGTGCACGCTCGGCCACTGCCAAAGGGATCCGCTGCGCGTTGCTGAGCGTATCGAGCTGCGCACCGCTGCATTGCTGAAGCAGCTCACGGGTACAGCGAGCCGACAGGCCGGGGAAAGTGCGCCGCAGTATCCGCTCGATGCCATTGGGCTGCACTTGCCGATCAGCAACGTACTGCGCCAGTCGCGGCGCGCTGAAGTCCGGGTGTAATTCATGTGCCT  <  1:620394/235‑1                                                                                                                                                                                                                                      CGCGCAGCGACCATCGTGCACGCTCGGCCACTGCCAAAGGGATCCGCTGCGCGTTGCTGAGCGTATCGAGCTGCGCACCGCTGCATTGCTGAAGCAGCTCACGGGTACAGCGAGCCGACAGGCCGGGGAAAGTGCGCCGCAGTATCCGCTCGATGCCATTGGGCTGCACTTGCCGATCAGCAACGTACTGCGCCAGTCGCGGCGCGCTGAAGTCCGGGTGTAATTCATGTGCC   >  1:633584/1‑233                                                                                                                                                                                                                                      CGCGCAGCGACCATCGTGCACGCTCGGCCACTGCCAAAGGGATCCGCTGCGCGTTGCTGAGCGTATCGAGCTGCGCACCGCTGCATTGCTGAAGCAGCTCACGGGTACAGCGAGCCGACAGGCCGGGGAAAGTGCGCCGCAGTATCCGCTCGATGCCATTGGGCTGCACTTGCCGATCAGCAACGTACTGCGCCAGTCGCGGCGCGCTGAAGTCCGGGTGTAATTC          >  1:862198/1‑226                                                                                                                                                                                                                                      CGCGCAGCGACCATCGTGCACGCTCGGCCACTGCCAAAGGGATCCGCTGCGCGTTGCTGAGCGTATCGAGCTGCGCACCGCTGCATTGCTGAAGCAGCTCACGGGTACAGCGAGCCGACAGGCCGGGGAAAGTGCGCCGCAGTATCCGCTCGATGCCATTGGGCTGCACTTGCCGATCAGCAACGTACGGCGCCAGTCGCGGCGCGCTGtc                         >  1:320414/1‑209                                                                                                                                                                                                                                       GCGCAGCGTCCATCGTGCACGCTCGGCCACTGCCAAAGGGATCCGCTGCGCGTTGCTGTGCGTATCGAGCTGCGCACCGCTGCATTGCTGAAGCAGCTCACGGGTACAGCGAGCCGACAGGCCGGGGAAAG                                                                                                        <  1:167018/131‑1                                                                                                                                                                                                                                          CAGCGACCATCGTGCACGCTCGGCCACTGCCAAAGGGATCCGCTGCGCGTTGCTGAGCGTATCGAGCTGCGCACCGCTGCATTGCTGAAGCAGCTCACGGGTACAGCGAGCCGACAGGCCGGGGAAAGTGCGCCGCAGTATCCGCTCGATGCCATTGGGCTGCACTTGCCGATCAGCAACGTACTGCGCCAGTCGCGGCGCGCTGAAG                        <  1:281113/208‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AGCACATGGGCGCACCTGCACGGTTGCTCGATGCCCTGGAGCTTTATCAGGCACATGAATTACACCCGGACTTCAGCGCGCCGCGACTGGCGCAGTACGTTGCTGATCGGCAAGTGCAGCCCAATGGCATCGAGCGGATACTGCGGCGCACTTTCCCCGGCCTGTCGGCTCGCTGTACCCGTGAGCTGCTTCAGCAATGCAGCGGTGCGCAGCTCGATACGCTCAGCAACGCGCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1228622‑1228859 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcagcgACCATCGTGCACGCTCGGCCACTGCCAAAGGGATCCGCTGCGCGTTGCTGAGCGTATCGAGCTGCGCACCGCTGCATTGCTGAAGCAGCTCACGGGTACAGCGAGCCGACAGGCCGGGGAAAGTGCGCCGCAGTATCCGCTCGATGCCATTGGGCTGCACTTGCCGATCAGCAACGTACTGCGCCAGTCGCGGCGCGCTGAAGTCCGGGTGTAATTCATGTGCCT  <  AE015451/1228894‑1228670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.