New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1595988	32 (0.560)	4 (0.070)	4/324	NT	10.5%	coding (1023/1335 nt)	dctD‑III	C4‑dicarboxylate transport transcriptional regulatory protein
	?	AE015451	= 1596052	38 (0.700)					coding (959/1335 nt)	dctD‑III	C4‑dicarboxylate transport transcriptional regulatory protein

AGGCAGTTGCAAGGCCTCCATCACCGACTTGATCTCGCCCCCATGCTGACGCAAGGCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1595745‑1595988 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcggcgggAGGACATTCCGCTGCTGTTCGAACACTTTGCCCGTGCTGCCGGTGAAAAGCTTGGTCGCGCGGCCCCGCCGCTATCGGGTGCACAGCTGGCGCAGCTGCTGTCACATGACTGGCCTGGCAACGTGCGTGAACTGGCCAATGCGGCGGAGCGGCATGCGTTGGGGCTGGGTTCGCCAAATATCGAGGTGGCACCTGCCGGGCAGTCGCTGGGCGAGCAGATGGAAGCATTCG  <  AE015451/1596052‑1595822                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGGCAGTTGCAAGGCCTCCATCACCGACTTGATCTCGCCCCCATGCTGACGCAAGGCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATA                                                                                                                                                                                                                                                 <  1:699283/236‑1    CAGTTGCAAGGCCTCCATCACCGACTTGATCTCGCCCCCATGCTGACGCAAGGCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAG                                                                                                                                                                                                                                                >  1:294183/1‑234          CAAGGCCTCCATCACCGACTTGATCTCGCCCCCATGCTGACGCAAGGCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGG                                                                                                                                                                                                                                         >  1:930828/1‑235                            CTTGATCTCGCCCCCATGCTGACGCAAGGCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGG                                                                                                                                                                                                                                          >  1:688323/1‑216                                ATCTCGCCCCCATGCTGACGCAAGGCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGG                                                                                                                                                                                                                                         >  1:318806/1‑213                                                   GCAAGGCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGAGGACATTCCGCTGCTGTTCGAACACTTTGCCCGTGCTGCCG                                                                                                                                                                                               <  1:419263/236‑1                                                   GCAAGGCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGAGGACATTCCGC                                                                                                                                                                                                                             <  1:851765/206‑1                                                                                                CGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGggcg                                                                                                                                                                                                                                     >  1:157312/1‑149                                                                                                                                                         CATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGGGCACCCGATAGCGGCG                                                                                                                                                                                                                                           >  2:133610/1‑90                                                                                                                                                                                          CGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGAGGACATTCCGCTGCTGTTCGAACACTTTGCCCGTGCTGCCGGTGAAAAGCTTGGTCGCGCGGCCCCGCCGCTATCGGGTGCACAGCTGGCGCAGCTGCTGTCACATGACTGGCCTGGCAACGTGCG‑GAACTGGCCAATGCGGCGGAGCGGCATGCGTTGGGGCTGGGGTCGCCA                                                         >  1:637099/1‑234                                                                                                                                                                                                          ATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGAGGACATTCCGCTGCTGTTCGAACACTTTGCCCGTGCTGCCGGTGAAAAGCTTGGTCGCGCGGCCCCGCCGCTATCGGGTGCACAGCTGGCG                                                                                                                                             >  2:1047676/1‑135                                                                                                                                                                                                                                                GCGGGAGGACATTCCGCTGCTGTTCGAACACTTTGCCCGTGCTGCCGGTGAAAAGCTTGGTCGCGCGGCCCCGCCGCTATCGGGTGCACAGCTGGCGCAGCTGCTGTCACATGACTGGCCTGGCAACGTGCGTGAACTGGCCAATGCGGCGGAGCGGCATGCGTTGGGGCTGGGTTCGCCAAATATCGAGGTGGCACCTGCCGGGCAGTCGCTGGGCGAGCAGATGGAAGCATTC   >  1:14394/1‑235                                                                                                                                                                                                                                                GCGGGAGGACATTCCGCTGCTGTTCGAACACTTTGCCCGTGCTGCCGGTGAAAAGCTTGGTCGCGCGGCCCCGCCGCTATCGGGTGCACAGCTGGCGCAGCTGCTGTCACATGACTGGCCTGGCAACGTGCGTGAACTGGCCAATGCGGC                                                                                        <  2:769244/150‑1                                                                                                                                                                                                                                                GCGGGAGGACATTCCGCTGCTGTTCGAACACTTGGCCCGTGCTGCCGGTGAAAAGCTTGGTCGCGCGGCCCCGCCGCTATCGGGTGCACAGCTGGCGCAGCTGCTGTCACATGACTGGCCTGGCAACGTGCGTGAACTGGCCAATGCGGCGGAGCGGCATGCGTTGGGGCTGGGTTCGCCAAATATCGAGGTGGCACCTGCCGGGCAGTCGCTGGGCGAGCAGATGGAAGCATTCG  <  1:992600/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGGCAGTTGCAAGGCCTCCATCACCGACTTGATCTCGCCCCCATGCTGACGCAAGGCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1595745‑1595988 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcggcgggAGGACATTCCGCTGCTGTTCGAACACTTTGCCCGTGCTGCCGGTGAAAAGCTTGGTCGCGCGGCCCCGCCGCTATCGGGTGCACAGCTGGCGCAGCTGCTGTCACATGACTGGCCTGGCAACGTGCGTGAACTGGCCAATGCGGCGGAGCGGCATGCGTTGGGGCTGGGTTCGCCAAATATCGAGGTGGCACCTGCCGGGCAGTCGCTGGGCGAGCAGATGGAAGCATTCG  <  AE015451/1596052‑1595822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.