New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 2101747 = | 56 (0.970) | 3 (0.060) | 3/306 | NT | 5.7% | coding (561/768 nt) | PP_1878 | conserved protein of unknown function |
? | AE015451 | 2101765 = | 50 (0.970) | coding (543/768 nt) | PP_1878 | conserved protein of unknown function |
ACAACCCACCCAACCCGATCCACACCGAGATCAAGGCCAAGGACGTACGCTTCTTGCTGGAGGCGCTGCACAATCAGGTGACCCGCGCTGCCCATGAGGGCTTCTTGCCCGCTGTCGAGGCCAAGCATTGGGTCAAGGAAATCCGCCATATCCTGGTGCTGCTGCATATAGAGTTCTTCAACAACCTCGGCCAACAGGCCCTGCAAAAAGGCCAGCCCGGCCAGGCGCGCCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/2101982‑2101747 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaggcgcgcctggccGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCGGGCAAGAAGCCCTCATGGGCAGCGCGGGTCACCTGATTGTGCAGCGCCTCCAGCAAGAAGCGTACGTCCTTGGCCTTGATCTCGGTGTGGATCGGGTTGGGTGGGTTGTTGACCGG > AE015451/2101765‑2101989 ACAACCCACCCAACCCGATCCACACCGAGATCAAGGCCAAGGACGTACGCTTCTTGCTGGAGGCGCTGCACAATCAGGTGACCCGCGCTGCCCATGAGGGCTTCTTGCCCGCTGTCGAGGCCAAGCATTGGGTCAAGGAAATCCGCCATATCCTGGTGCTGCTGCATATAGAGTTCTTCAACAACCTCGGCCAACAGGCCCTGCAAAAAGGCCAGCCCGGCCAGGCGCGCCTGGCC > 1:872690/1‑236 ACCCAACCCGATCCACACCGAGATCAAGGCCAAGGACGTACGCTTCTTGCTGGAGGCGCTGCACAATCAGGTGACCCGCGCTGCCCATGAGGGCTTCTTGCCCGCTGTCGAGGCCAAGCATTGGGTCAAGGAAATCCGCCATATCCTGGTGCTGCTGCATATAGAGTTCTTCAACAACCTCGGCCAACAGGCCCTGCAAAAAGGCCAGCCCGGCC < 2:482813/215‑1 TCAAGGCCAAGGACGTACGCTTCTTGCTGGAGGCGCTGCACAATCAGGTGACCCGCGCTGCCCATGAGGGCTTCTTGCCCGCTGTCGAGGCCAAGCATTGGGTCAAGGAAATCCGCCATATCCTGGTGCTGCTGCATATAGAGTTCTTCAACAACCTCGGCCAACAGGCCCTGCAAAAAGGCCAGCCCGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGG < 2:872687/225‑1 TGTCGAGGCCAAGCATTGGGTCAAGGAAATCCGCCATATCCTGGTGCTGCTGCATATAGAGTTCTTCAACAACCTCGGCCAACAGGCCCTGCAAAAAGGCCAGCCCGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGG > 1:956612/1‑158 TGTCGAGGCCAAGCATTGGGTCAAGGAAATCCGCCATATCCTGGTGCTGCTGCATATAGAGTTCTTCAACAACCTCGGCCAACAGGCCCTGCAAAAAGGCCAGCCCGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGG < 2:956609/158‑1 AACAACCTCGGCCAACAGGCCCTGCAAAAAGGCCAGCCCGGCCAGGCGCGCCCGGCCct > 2:263700/1‑57 GCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCGGGCAAGAAGCCCTCATGGGCAGCGCGGGTCACCTGATTGTGCAGCGCCTCCAGCAAGAAGCGTACGTCCTTGGCCTTGATCTCGGTGTGGATCGGGTTGGGTGGGTTGTTGACCGG > 1:650868/1‑235 GCCTGGCCGCGCTTGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCGGGCAAGAAGCCCTCATGGGCAGCGCGGGTCACCTGATTGTGCAGCGCCTCCAGCAAGAAGCGTACGTCCTTGG < 2:1065186/190‑1 ACAACCCACCCAACCCGATCCACACCGAGATCAAGGCCAAGGACGTACGCTTCTTGCTGGAGGCGCTGCACAATCAGGTGACCCGCGCTGCCCATGAGGGCTTCTTGCCCGCTGTCGAGGCCAAGCATTGGGTCAAGGAAATCCGCCATATCCTGGTGCTGCTGCATATAGAGTTCTTCAACAACCTCGGCCAACAGGCCCTGCAAAAAGGCCAGCCCGGCCAGGCGCGCCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/2101982‑2101747 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaggcgcgcctggccGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCGGGCAAGAAGCCCTCATGGGCAGCGCGGGTCACCTGATTGTGCAGCGCCTCCAGCAAGAAGCGTACGTCCTTGGCCTTGATCTCGGTGTGGATCGGGTTGGGTGGGTTGTTGACCGG > AE015451/2101765‑2101989 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |