New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2459649	43 (0.750)	4 (0.070)	4/328	NT	8.6%	coding (644/717 nt)	ugpQ	glycerophosphoryl diester phosphodiesterase
	?	AE015451	= 2459657	44 (0.800)					coding (636/717 nt)	ugpQ	glycerophosphoryl diester phosphodiesterase

AACCAGCCAGGTGAGCAGAACAACCTGAAGTACTTCGTCAACACCACGTTCAACTACCCGACCATGGCCGAAGCCTATCGGGTAGCTGCCTATGACGGCCTGAACCGGCTTTTTTGAGCGGCTCCGACCGG‑T‑‑GGCCTGAGCCGGTCGGAGAGACCGATTTCAACCCTACCCGAGGGTGGTCTTGGCCAAACCGGGAAAGTCTGTAATCAGGCTGTCCACACCAAAGTCAGCCAGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2459411‑2459649 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggcACTGATGCGCCGGCTGGCTGACTTTGGTGTGGACAGCCTGATTACAGACTTTCCCGGTTTGGCCAAGACCACCCTCGGGTAGGGTTGAAATCGGTCTCTCCGACCGGCTCAGGCCACCGGTCGGAGCCGCTCAAAAAAGCCGGTTCAGGCCGTCATAGGCAGCTACCCGATAGGCTTCGGCCATGGTCGGGTAGTTGAACGT  <  AE015451/2459657‑2459456                                                                                                                                                                                                                                                                                                                                                                                                                                                              AACCAGCCAGGTGAGCAGAACAACCTGAAGTACTTCGTCAACACCACGTTCAACTACCCGACCATGGCCGAAGCCTATCGGGTAGCTGCCTATGACGGCCTGAACCGGCTTTTTTGAGCGGCTCCGACCGG‑T‑‑GGCCTGAGCCGGTCGGAGAGACCGATTTCAACCCTACCCGAGGGTGGTCTTGGCCAAACCGGGAAAGTCTGTAATCAGGCTGTCCACACCAAAGTCAGCCAGC                                                                                                                                                                                                                <  1:287658/235‑1                                                  TCAACTACCCGACCATGGCCGAAGCCTATCGGGTAGCTGCCTATGACGGCCTGAACCGGCTTTTTTGAGCGGCTCCGACCGGCTCAGGCC‑‑A‑CCGGTCGGAGAGACCGATTTCAACCCTACCCGAGGGTGGTCTTGGCCAAACCGGGAAAGTCTGTAATCAGGCTGTCCACACCAAAGTCAGCCAGCCGGCACTGATGCGCCGGCTCGTTGACcgtccacaccg                                                                                                                                                                           >  1:944571/1‑212                                                           CGACCATGGCCGAAGCCTATCGGGTAGCTGCCTATGACGGCCTGAACCGGCTTTTTTGAGCGGCTCCGACCGG‑C‑‑TCAGGCCACCGGTCGGAGAGACCGATTTCAACCCTACCCGAGGGTGGTCTTGGCCAAACCGGGAAAGTCTGTAATCAGGCTGTCCACACCAAAGTCAGCCAGCCGGCACTGATGCGCCGGCTGGCTGACTTTGGTGTGGACAGCCTGATTACAGACTTTCCC                                                                                                                                                     <  1:578076/236‑1                                                                    CCGAAGCCTATCGGGTAGCTGCCTATGACGGCCTGAACCGGCTTTTTTGAGCGGCTCCGACCGGCTCAGGCC‑‑A‑CCGGTCGGAGAGACCGATTTCAACCCTACCCGAGGGTGGTCTTGGCCAAACCGGGAAAGTCTGTAATCAGGCTGTCCACACCAAAGTCAGCCAGCCGGCACTGATGCGCCGGCTGGC                                                                                                                                                                                          >  2:578073/1‑190                                                                                                                                                                     AACCCTACCCGAGGGTGGTCTTGGCCAAACCGGGAAAGTCTGTAATCAGGCTGTCAACACCAAAGTCAGCCAGCCGCCACTGATGCGCCGGCTGGCTGACTTTGGCGTGGACATCCTG                                                                                                                                                                    >  1:463763/1‑118                                                                                                                                                                                                                                                GGCACTGATGCGCCGGCTGGCTGACTTTGGTGTGGACAGCCTGATTACAGACTTTCCCGGTTTGGCCAAGACCACCCTCGGGTAGGGTTGAAATCGGTCTCTCCGACCGGCTCAGGCCACCGGTCGGAGCCGCTCAAAAAAGCCGGTTCAGGCCGTCATAGGCAGCTACCCGATAGGCTTCGGCCATGGTCGGGCAGTTGAACGT  >  1:1015299/1‑205                                                                                                                                                                                                                                                                                                                                                                                                                                                              AACCAGCCAGGTGAGCAGAACAACCTGAAGTACTTCGTCAACACCACGTTCAACTACCCGACCATGGCCGAAGCCTATCGGGTAGCTGCCTATGACGGCCTGAACCGGCTTTTTTGAGCGGCTCCGACCGG‑T‑‑GGCCTGAGCCGGTCGGAGAGACCGATTTCAACCCTACCCGAGGGTGGTCTTGGCCAAACCGGGAAAGTCTGTAATCAGGCTGTCCACACCAAAGTCAGCCAGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2459411‑2459649 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggcACTGATGCGCCGGCTGGCTGACTTTGGTGTGGACAGCCTGATTACAGACTTTCCCGGTTTGGCCAAGACCACCCTCGGGTAGGGTTGAAATCGGTCTCTCCGACCGGCTCAGGCCACCGGTCGGAGCCGCTCAAAAAAGCCGGTTCAGGCCGTCATAGGCAGCTACCCGATAGGCTTCGGCCATGGTCGGGTAGTTGAACGT  <  AE015451/2459657‑2459456

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.