New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2460050 =	47 (0.820)	3 (0.050)	3/328	NT	6.5%	coding (243/717 nt)	ugpQ	glycerophosphoryl diester phosphodiesterase
	?	AE015451	2460124 =	41 (0.740)					coding (169/717 nt)	ugpQ	glycerophosphoryl diester phosphodiesterase

ACCCTGATCTACGGCCATCGCGGCGCCAAGGGCGAAGCACCCGAGAACACCCTGAAGAGCTTTCAGCAATGCCTGTCCCATGGCGTGACCCGCTGCGAGCTGGACCTGCACTTGTCATCCGACAACGAACTGATGGTCATCCACGACCCCACCCTCAAGCGCACCACGGGCCGGCGCGGCAAAGTGGTCGAGCACCCGGCCGCCGAACTGGTCAAGATCGATGCCCGCAAAGGCGGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2460289‑2460050 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcccgTGGTGCGCTTGAGGGTGGGGTCGTGGATGACCATCAGTTCGTTGTCGGATGACAAGTGCAGGTCCAGCTCGCAGCGGGTCACGCCATGGGACAGGCATTGCTGAAAGCTCTTCAGGGTGTTCTCGGGTGCTTCGCCCTTGGCGCCGCGATGGCCGTAGATCAGGGTCAC  >  AE015451/2460124‑2460292                                                                                                                                                                                                                                                                                                                                                                                                                           ACCCTGATCTACGGCCATCGCGGCGCCAAGGGCGAAGCACCCGAGAACACCCTGAAGAGCTTTCAGCAATGCCTGTCCCATGGCGTGACCCGCTGCGAGCTGGACCTGCACTTGTCATCCGACAACGAACTGATGGTCATCCACGACCCCACCCTCAAGCGCACCACGGGCCGGCGCGGCAAAGTGGTCGAGCACCCGGCCGCCGAACTGGTCAAGATCGATGCCCGCAAAGGCG                                                                                                                                                                                <  1:386357/235‑1                                                                                                                                                              AGCGCACCACGGGCCGGCGCGGCAAAGTGGTCGAGCACCCGGCCGCCGAACTGGTCAAGATCGATGCCCGCAAAGGCGGCCCGTGGTGCGCTTGAGGGTGGGGTCGTGGATGACCATCAGTTCGTTGTCGGATGACAAGTGCAGGTCCAGCTCGCAGCGGGTCACGCCATGGGACAGGCATT                                                                        <  1:933370/182‑1                                                                                                                                                                gGCACCACGGGCCGGCGCGGCAAAGTGGTCGAGCACCCGGCCGCCGAACTGGTCAAGATCGATGCCCGCAAAGGCGGCCCGTGGTGCGCTTGAGGGTGGGGTCGTGGATGAC                                                                                                                                            <  2:264400/111‑1                                                                                                                                                                                                   CCCGGCCGCCGAACTGGTCAAGATCGATGCCCGCAAAGGCGGCCCGTGGTGCGCTTGAGGGTGGGGTCGTGGATGACCATCAGTTCGTTGTCGGATGACAAGTGCAGGTCCAGCTCGCAGCGGGTCACGCCATGGGACAGGCATTGCTGAAAGCTCTTCAGGGTGTTCTCGGGTGCTTCGCCCTTGGCGCCGCGATGGCCGTAGATCAGGGTCAC  >  2:1079004/1‑215                                                                                                                                                                                                                                               CGTGGTGCGCTTGAGGGTGGGGTCGTGGATGACCATCAGTTCGTTGTCGGATGACAAGTGCAGGTCCAGCTCGCAGCGGGTCACGCCATGGGACAGGCATTGCTGAAAGCTCTTCAGGGTGTTCTCGGGTGCTTCGCCCTTGGCGCCGCGATGGCCGTA              >  2:198620/1‑159                                                                                                                                                                                                                                                GTGGTGCGCTGGAGGGTGGGGTCGTGGATGACCATCAGTTCGTTGTCGGAGGACAAGTGCAGGTCCAGCTCGCAGCGGGTCACGCCATGGGACAGGCATTGCTGAAAGCTCTTCAGGGTGTTCTCGGGTGCTTCGCCCTTGGCGCCGC                        <  2:80780/148‑1                                                                                                                                                                                                                                                                                                                                                                                                                           ACCCTGATCTACGGCCATCGCGGCGCCAAGGGCGAAGCACCCGAGAACACCCTGAAGAGCTTTCAGCAATGCCTGTCCCATGGCGTGACCCGCTGCGAGCTGGACCTGCACTTGTCATCCGACAACGAACTGATGGTCATCCACGACCCCACCCTCAAGCGCACCACGGGCCGGCGCGGCAAAGTGGTCGAGCACCCGGCCGCCGAACTGGTCAAGATCGATGCCCGCAAAGGCGGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2460289‑2460050 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcccgTGGTGCGCTTGAGGGTGGGGTCGTGGATGACCATCAGTTCGTTGTCGGATGACAAGTGCAGGTCCAGCTCGCAGCGGGTCACGCCATGGGACAGGCATTGCTGAAAGCTCTTCAGGGTGTTCTCGGGTGCTTCGCCCTTGGCGCCGCGATGGCCGTAGATCAGGGTCAC  >  AE015451/2460124‑2460292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.