New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2661972	53 (0.920)	4 (0.070)	4/324	NT	7.2%	coding (76/891 nt)	mmgF	2‑methylisocitrate lyase
	?	AE015451	= 2661979	53 (0.970)					coding (83/891 nt)	mmgF	2‑methylisocitrate lyase

CACCATCGCATTCTTGATGCCATCGCCGACCGTGACGGCGAACTGGCCGAACTCCTGATGCGCCGCCACATCGGCGCGTCCAAGCGCAATATCGAGCGTCACTACCTGGACGCCCACAACAACAGCACACGAGGTGAGAAATGACAGTCAAGAGCACCCCCGGTCAGCGTTTCCGTGACGCCGTTGCCGCTGAGCATCCGCTGCAGGTGGTTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2661757‑2661972 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggttggcgTTGATGGCGCCAACCACCTGCAGCGGATGCTCAGCGGCAACGGCGTCACGGAAACGCTGACCGGGGGTGCTCTTGACTGTCATTTCTCACCTCGTGTGCTGTTGTTGTGGGCGTCCAGGTAGTGACGCTCGATATTGCGCTTGGACGCGCCGATGTGGCGGCGCATCAGGAGTTCGGCCAGTTCGCCGTCACGGTCGGCGATGG  <  AE015451/2661979‑2661776                                                                                                                                                                                                                                                                                                                                                                                                                                      CACCATCGCATTCTTGATGCCATCGCCGACCGTGACGGCGAACTGGCCGAACTCCTGATGCGCCGCCACATCGGCGCGTCCAAGCGCAATATCGAGCGTCACTACCTGGACGCCCACAACAACAGCACACGAGGTGAGAAATGACAGTCAAGAGCACCCCCGGTCAGCGTTTCCGTGACGCCGTTGCCGCTGAGCATCCGCTGCAGGT                                                                                                                                                                                                                      <  2:1067600/208‑1                    CCATCGCCGACCGTGACGGCGAACTGGCCGAACTCCTGATGCGCCGCCACATCGGCGCGTCCAAGCGCAATAGCGAGCGTCACTACCTGGACGCCCACAACAACAGCACACGAGGTGAGAAATGACAGTCAAGAGCACCCCCGGTCAGCGTTTCCGTGACGCCGTTGCCGCTGAGCATCCGCTGCAGGTGGTT                                                                                                                                                                                                                  <  2:135313/193‑1                                                                                             CGAGCGTCACTACCTGGACGCCCACAACAACAGCACACGAGGTGAGAAATGACAGTCAAGAGCACCCCCGGTCAGCGTTTCCGTGACGCCGTTGCCGCTGAGCATCCGCTGCAGGTGGTTGGCGTTGATGGCGCCAACC                                                                                                                                                                                               <  1:555463/139‑1                                                                                             CGAGCGTCACTACCTGGACGCCCACAACAACAGCACACGAGGTGAGAAATGACAGTCAAGAGCACCCCCGGTCAGCGTTTCCGTGACGCCGTTGCCGCTGAGCATCCGCTGCAGGTGGTTGGCGTTGATGGCGCCAACC                                                                                                                                                                                               >  2:555460/1‑139                                                                                                                      AACAACAGCACACGAGGTGAGAAATGACAGTCAAGAGCACCCCCGGTCAGCGTTTCCGTGACGCCGTTGCCGCTGAGCATCCGCTGCAGGTGGTTGGCGTTGCTGGCGCCAACCACCTGCAGCGGATGCTCAGCGGCAACGGCGTCACGGAAACGCTGACCGGGGGTG                                                                                                                                         >  1:1028589/1‑168                                                                                                                                                       AGAGCACCCCCGGTCAGCGTTTCCGTGACGCCGTTGCCGCTGAGCATCCGCTGCAGGTGGTTGGCGTTGATGGCGCCAACCACCTGCAGCGGATGCTCAGCGGCAACGGCGTCACGGAAACGCTGACCGGGGGTGCTCTTGACTGTCATTTCTCACCTCGTGTGCTGTTGTTGTGGGCGTCCAGGTAGTGACGCTCGATATTGCGCTTGGACGCGCCGAT                                                    >  1:433597/1‑220                                                                                                                                                                                                                     GGCGTTGATGGCGCCAACCACCTGCAGCGGATGCTCAGCGGCAACGGCGTCACGGAAACGCTGACCGGGGGTGCTCGTGACTGTCATTTCTCACCTCGTGTGCTGTTGTTGTGGG                                                                                               <  1:658747/115‑1                                                                                                                                                                                                                      GCGTTGACGGCGCCCACCACCTGCAGCGGATGCTCAGCGGCAACGGCGTCACGGAAACGCTGACCGGGGGTGCTCTTGACTGTCATTTCTCACCTCGTGTGCTGTTGTTGTGGGCGTCCAGGTAGTGACGCTCGATATTGCGCTTGGACGCGCCGATGTGGCGGCGCATCAGGAGTTCGGCCAGTTCGCCGTCACGGTCGGCGATGG  <  2:1066071/207‑1                                                                                                                                                                                                                                                                                                                                                                                                                                      CACCATCGCATTCTTGATGCCATCGCCGACCGTGACGGCGAACTGGCCGAACTCCTGATGCGCCGCCACATCGGCGCGTCCAAGCGCAATATCGAGCGTCACTACCTGGACGCCCACAACAACAGCACACGAGGTGAGAAATGACAGTCAAGAGCACCCCCGGTCAGCGTTTCCGTGACGCCGTTGCCGCTGAGCATCCGCTGCAGGTGGTTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2661757‑2661972 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggttggcgTTGATGGCGCCAACCACCTGCAGCGGATGCTCAGCGGCAACGGCGTCACGGAAACGCTGACCGGGGGTGCTCTTGACTGTCATTTCTCACCTCGTGTGCTGTTGTTGTGGGCGTCCAGGTAGTGACGCTCGATATTGCGCTTGGACGCGCCGATGTGGCGGCGCATCAGGAGTTCGGCCAGTTCGCCGTCACGGTCGGCGATGG  <  AE015451/2661979‑2661776

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.