New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2774802 =	45 (0.780)	4 (0.070)	4/326	NT	8.9%	coding (710/1353 nt)	PP_5521	protein of unknown function
	?	AE015451	2774821 =	39 (0.710)					coding (691/1353 nt)	PP_5521	protein of unknown function

ATGCCGAGGGCGTGCGTGTGACCGATGGCTGGGGCGGCCCGCAAGTGCAACGCCTGGCCTGGCCCACGGGGCTGGAGGGGTTGCCGCCAGGTTACCCGTTCGAGCCGTTCGACCTGCCGCCCACACCGACCGCGCTGATCCCCTTCCCCGATGGCCAGCGAGTACTGCTGGTGAGCGCCGAAGGTATCTTCGTACTGGCCACTCAAGGTGCGACTCGCCTGCTGCCACAGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2775036‑2774802 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcaggcGAGTCGCACCTTGAGTGGCCAGTACGAAGATACCTTCGGCGCTCACCAGCAGTACTCGCTGGCCATCGGGGAAGGGGATCAGCGCGGTCGGTGTGGGCGGCAGGTCGAACGGCTCGAACGGGTAACCTGGCGGCAACCCCTCCAGCCCC  >  AE015451/2774821‑2774969                                                                                                                                                                                                                                                                                                                                                                                                  ATGCCGAGGGCGTGCGTGTGACCGATGGCTGGGGCGGCCCGCAAGTGCAACGCCTGGCCTGGCCCACGGGGCTGGAGGGGTTGCCGCCAGGTTACCCGTTCGAGCCGTTCGACCTGCCGCCCACACCGACCGCGCTGATCCCCTTCCCCGATGGCCAGCGAGTACTGCTGGTGAGCGCCGAAGGTATCTTCGTACTGGCCACTCAAGGTGCGACTCGCCTGCTGCCACAGCAGGC                                                                                                                                                       <  1:1072375/235‑1  TGCCGAGGGCGTGCGTGTGACCGATGGCTGGGGCGGCCCGCAAGTGCAACGCCTGGCCTGGCCCACGGGGCTGGAGGGGTTGCCGCCAGGTTACCCGTTCGAGCCGTTCGACCTGCCGCCCACACCGACCGCGCTGATCCCCTTCCCCGATGGCCAGCGAGTACTGCTGGTGAGCGCCGAAGGTATCTTCGTACTGGCCACTCAAGGTGCGACTCGCCTGCTGCCACAGCAGGCG                                                                                                                                                      <  1:691521/235‑1                              TGGGGCGGCCCGCAAGTGCAACGCCTGGCCTGGCCCACGGGGCTGGAGGGGTTGCCGCCAGGTTACCCGTTCGAGCCGTTCGACCTGCCGCCCACACCGACCGCGCTGATCCCCTTCCCCGATGGCCAGCGAGTACTGCTGGTGAGCGCCGAAGGTATCTTCGTACTGGCCACTCAAGGTGCGACTCGCCTGCTGCCACAGCA                                                                                                                                                          >  1:517704/1‑203                                           AAGTGCAACGCCTGGCCTGGCCCACGGGGCTGGAGGGGTTGCCGCCAGGTTACCCGTTCGAGCCGTTCGACCTGCCGCCCACACCGACCGCGCTGATCCCCTTCCCCGATGGCCAGCGAGTACTGCTGGTGAGCGCCGAAGGTATCTTCGTACTGGCCACTCAAGGTGCGACTCGCCTGCTGCCACAGCAGGCGAG                                                                                                                                                    <  2:857937/196‑1                                                               CCCACGGGGCTGGAGGGGTTGCCGCCAGGTTACCCGTTCGAGCCGTTCGACCTGCCGCCCACACCGACCGCGCTGATCCCCTTCCCCGATGGCCAGCGAGTACTGCTGGTGAGCGCCGAAGGTATCTTCGTACTGGCCACTCAAGGTGCGACTCGCCTGCTGCCACAGCAGGCGAGTCGCACCTTGAGTGGCCAGTACGAAGATACCTT                                                                                                                   <  1:914404/209‑1                                                                 CACGGGGCTGGAGGGGTTGCCGCCAGGTTACCCGTTCGAGCCGTTCGACCTGCCGCCCACACCGACCGCGCTGATCCCCTTCCCCGATGGCCAGCGAGTACTGCTGGTGAGCGCCGAAGGTATCTTCGTACTGGCCACTCAAGGTGCGACTCGCCTGCTGCCACAGCAGGC                                                                                                                                                       >  1:513921/1‑171                                                                 CACGGGGCTGGAGGGGTTGCCGCCAGGTTACCCGTTCGAGCCGTTCGACCTGCCGCCCACACCGACCGCGCTGATCCCCTTCCCCGATGGCCAGCGAGTACTGCTGGTGAGCGCCGAAGGTATCTTCGTACTGGCCACTCAAGGTGCGACTCGCCTGCTGCCACAGCAGGC                                                                                                                                                       <  2:513918/171‑1                                                                       GCTGGAGGGGTTGCCGCCAGGTTACCCGTTCGAGCCGTTCGACCTGCCGCCCACACCGACCGCGCTGATCCCCTTCCCCGATGGCCAGCGAGTACTGCTGGTGAGCGCCGAAGGTATCTTCGTACTGGCCACTCAAGGTGCGACTCGCCTGCTGCCACAGCAGGCGAGTCGCACCTTGAGTGGCCAGTACGAAGATACCTTCGGCGCTCACCAGCAGTACTCGCTGGCCATCGGG                                                                                 >  1:505296/1‑235                                                                                                   TTCGCGCCGTTCGACCTGCCGCCCACACCGACCGCGCTGATCCCCTTCCCCGATGGCCAGCGAGTACTGCTGGTGAGCGCCGAAGGTATCTTCGTACTGGCCACTCAAGGTGCGACTCGCCTGCTGCCACAGCAGGCGAGTCGCACCTTGAGT                                                                                                                                       <  2:189704/153‑1                                                                                                       AGCCGTTCGACCTGCCGCCCACACCGACCGCGCTGATCCCCTTCCCCGATGGCCAGCGAGTACTGCTGGTGAGCGCCGAAGGTATCTTCGTACTGGCCACTCAAGGTGCGACTCGCCCTCTGCCACA                                                                                                                                                             >  1:199438/1‑127                                                                                                                       GCCCACACCGACCGCGCTGATCCCCTTCCCCGATGGCCAGCGAGTACTGCTGGTGAGCGCCGAAGGTATCTTCGTACTGGCCACTCAAGGTGCGACTCGCCTGCTGCCACAGCAGGCGAGTCGCACCTTGAGTGGCCAGTACGAAGATACCTTCGGCGCTCACCAGCAGTACTCGCTGGCCATCGGGG                                                                                <  2:505293/188‑1                                                                                                                                                                                                                                         GGCGAGTCGCACCTTGAGTGGCCAGTACGACGATACCTTCGGCGCCCACCCGCAGTACTCGCTGGCCATCGGGGAAGGGGATCAGCGCGGTCGGTGTGGGCGGCAGGTCGAACGGCTCGAACGGGTAACCTGGCGGCAACCCCTCCAGCCCC  >  2:517701/1‑152                                                                                                                                                                                                                                                                                                                                                                                                  ATGCCGAGGGCGTGCGTGTGACCGATGGCTGGGGCGGCCCGCAAGTGCAACGCCTGGCCTGGCCCACGGGGCTGGAGGGGTTGCCGCCAGGTTACCCGTTCGAGCCGTTCGACCTGCCGCCCACACCGACCGCGCTGATCCCCTTCCCCGATGGCCAGCGAGTACTGCTGGTGAGCGCCGAAGGTATCTTCGTACTGGCCACTCAAGGTGCGACTCGCCTGCTGCCACAGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2775036‑2774802 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcaggcGAGTCGCACCTTGAGTGGCCAGTACGAAGATACCTTCGGCGCTCACCAGCAGTACTCGCTGGCCATCGGGGAAGGGGATCAGCGCGGTCGGTGTGGGCGGCAGGTCGAACGGCTCGAACGGGTAACCTGGCGGCAACCCCTCCAGCCCC  >  AE015451/2774821‑2774969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.