New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2976758	60 (1.040)	3 (0.050)	3/324	NT	5.0%	coding (694/816 nt)	PP_2603	conserved protein of unknown function
	?	AE015451	= 2976807	57 (1.040)					coding (743/816 nt)	PP_2603	conserved protein of unknown function

CTTCCACTTCAACCGCTCCGGCTCTTCGCTGGACGACCTGGCGCAACTGAAGCCGAAGCGCATGCGCTATGCCCAACTGTGTGACGTTGCTGGCCCGGTACCGGCCGACATGGACGAGATCCTGCGCCAGGCGCGTAACGAGCGACGCTTCCCGGGTGATGGCGATGCCGATCTGGTTGGCCTGTTACACGCCTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2976562‑2976758 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgccttgcTCCAGCAATTGCCGCGTGGGGATTTCCAGGCTCAGCGGCACGCTCGGCGGCAAGGCGTGTAACAGGCCAACCAGATCGGCATCGCCATCACCCGGGAAGCGTCGCTCGTTACGCGCCTGGCGCAGGATCTCGTCCATGTCGGCCGGTACCGGGCCAGCAACGTCACACAGTTGGGCATAGCGCATGCGCTTCGGCTTCAGTTGCGCCAGGTCGTCCAGCGAAGAGCCG  <  AE015451/2976807‑2976580                                                                                                                                                                                                                                                                                                                                                                                                                                           CTTCCACTTCAACCGCTCCGGCTCTTCGCTGGACGACCTGGCGCAACTGAAGCCGAAGCGCATGCGCTATGCCCAACTGTGTGACGTTGCTGGCCCGGTACCGGCCGACATGGACGAGATCCTGCGCCAGGCGCGTAACGAGCGACGCTTCCCGGGTGATGGCGATGCCGATCTGGTTGGCCTGTTACAC                                                                                                                                                                                                                                             <  1:976867/190‑1                  CCGGCTCTTCGCTGGACGACCTGGCGCAACTGAAGCCGAAGCGCATGCGCTATGCCCAACTGTGTGACGTTGCTGGCCCGGTACCGGCCGACATGGACGAGATCCTGCGCCAGCCGCGTAACGAGCGACGCTTCCCGGGTGATGGCGATGCCGATCTGGTTGGCCTGTTACACGCC                                                                                                                                                                                                                                          >  2:79460/1‑176                                                                              TGTGTGACGTTGCTGGCCCGGTACCGGCCGACATGGACGAGATCCTGCGCCAGGCGCGTAACGAGCGACGCTTCCCGGGTGATGGCGATGCCGATCTGGTTGGCCTGTTACACGCCTTGCTCCAGCAATTGCCGCGTGGGGATTTCCAGGCTCAGCGGCAC                                                                                                                                                                                             <  2:293547/161‑1                                                                                   GACGTTGCTGGCCCGGTACCGGCCGACATGGACGAGATCCTGCGCCAGGCGCGTAACGAGCGACGCTTCCCGGGTGATGGCGATGCCGATCTGGTTGGCCTGTTACACGCCTTGCTCCAGCAATTGCCGCGTGGGGATTTCCAGGCTCAGCGGCACGC                                                                                                                                                                                           >  1:752203/1‑158                                                                                   GACGTTGCTGGCCCGGTACCGGCCGACATGGACGAGATCCTGCGCCAGGCGCGTAACGAGCGACGCTTCCCGGGTGATGGCGATGCCGATCTGGTTGGCCTGTTACACGCCTTGCTCCAGCAATTGCCGCGTGGGGATTTCCAGGCTCAGCGGCACGC                                                                                                                                                                                           <  2:752200/158‑1                                                                                   GACGTTGCTGGCCCGGTACCGGCCGACATGGACGAGATCCTGCGCCAGGCGCGTAACGAGCGACGCTTCCCGGGTGATGGCGATGCCGATCTGGGTGGCCTGTTGCACGCCTTG                                                                                                                                                                                                                                       >  2:719189/1‑114                                                                                                                                                                                             ACGCCTTGCTCCAGCAATTGCCGCGTGGGGATTTCCAGGCTCAGCGGCACGCTCGGCGGCAAGGCGTGTAACAGGCCAACCAGATCGGCATCGCCATCACCCGGGAAGCGTCGCTCGTTACGCGCCTGGCGCAGGATCTCGTCCATGTCGGCCGGTACCGGGCCAGCAACGTCACACAGTTGGGCATAGCGCATGCGCTTCGGCTTCAGTTGCGCCAGGTCGTCCAGCGAAGAGC    <  1:949413/235‑1                                                                                                                                                                                             ACGCCTTGCTCCAGCAATTGCCGCGTGGGGATTTCCAGGCTCAGCGGCACGCTCGGCGGCAAGGCGTGTAACAGGCCAACCAGATCGGCATCGCCATCACCCGGGAAGCGTCGCTCGTTACGCGCCTGGCGCAGGATCTCGTCCATGTCGGCCGGTACCGGGCCAGCAACGTC                                                                  <  1:877235/173‑1                                                                                                                                                                                              CGCCTTGCTCCAGCAATTGCCGCGTGGGGATTTCCAGGCTCAGCGGCACGCTCGGCGGCAAGGCGTGTAACAGGCCAACCAGATCGGCATCGCCATCACCCGGGAAGCGTCGCTCGTTACGCGCCTGGCGCAGGATCTCGTCCATGTCGGCCGGTACCGGGCCAGCAACGTCACACAGTTGGGCATAGCG                                                >  2:939511/1‑190                                                                                                                                                                                               GCCTTGCTCCAGCAATTGCCGCGTGGGGATTTCCAGGCTCAGCGGCACGCTCGGCGGCAAGGCGTGTAACAGGCCAACCAGATCGGCATCGCCATCACCCGGGAAGCGTCGCTCGTTACGCGCCTGGCGCAGGATCTCGTCCATGTCGGCCGGTACCGGGCCAGCAACGTCACACAGTTGGGCATAGCGCATGCGCTTCGGCTTCAGTTGCGCCAGGTCGTCCAGCGAAGAGCCG  <  1:433601/235‑1                                                                                                                                                                                               GCCTTGCTCCAGCAATTGCCGCGTGGGGATTTCCAGGCTCAGCGGCACGCTCGGCGGCAAGGCGTGTAACAGGCCAACCAGATCGGCATCGCCATCACCCGGGAAGCGTCGCTCGTTACGCGCCTGGCGCAGGATCTCGTCCATGTCGGCCGGTACCGGGCCAGCAACGTC                                                                  <  2:406911/171‑1                                                                                                                                                                                                cctgcCTCCAGCAATTGCCGCGTGGGGATTTCCAGGCTCAGCGGCACGCTCGGCGGCAAGGCGTGTAACAGGCCAACCAGATCGGCATCGCCATCACCCGGGAAGCGTCGCTCGTTACGCGCCTGGCGC                                                                                                           >  2:800265/6‑129                                                                                                                                                                                                                                                                                                                                                                                                                                           CTTCCACTTCAACCGCTCCGGCTCTTCGCTGGACGACCTGGCGCAACTGAAGCCGAAGCGCATGCGCTATGCCCAACTGTGTGACGTTGCTGGCCCGGTACCGGCCGACATGGACGAGATCCTGCGCCAGGCGCGTAACGAGCGACGCTTCCCGGGTGATGGCGATGCCGATCTGGTTGGCCTGTTACACGCCTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2976562‑2976758 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgccttgcTCCAGCAATTGCCGCGTGGGGATTTCCAGGCTCAGCGGCACGCTCGGCGGCAAGGCGTGTAACAGGCCAACCAGATCGGCATCGCCATCACCCGGGAAGCGTCGCTCGTTACGCGCCTGGCGCAGGATCTCGTCCATGTCGGCCGGTACCGGGCCAGCAACGTCACACAGTTGGGCATAGCGCATGCGCTTCGGCTTCAGTTGCGCCAGGTCGTCCAGCGAAGAGCCG  <  AE015451/2976807‑2976580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.